Locus 5799

Sequence ID	3R_DroMel_CAF1
Location	15,144,535 – 15,144,641
Length	106
Max. P	0.687051

overview

Window 1

Location	15,144,535 – 15,144,641
Length	106
Sequences	4
Columns	114
Reading direction	reverse
Mean pairwise identity	81.83
Mean single sequence MFE	-26.25
Consensus MFE	-17.46
Energy contribution	-17.52
Covariance contribution	0.06
Combinations/Pair	1.05
Mean z-score	-1.78
Structure conservation index	0.67
SVM decision value	0.32
SVM RNA-class probability	0.687051
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15144535 106 - 27905053
UUAAUUUCCAACUUAAACUUGCUAUA--------GCUUUUGUAUCUCGGAUGAUGGUGGUGGUUUGAGUUAGGGUUGUUCACUGAUCCAGUGAAGUCACCUUUUGGUGAUUUAC
......(((((((((((((.(((((.--------.(.((((.....)))).)...))))))))))))))).)))...(((((((...)))))))((((((....)))))).... ( -31.40)
>DroSec_CAF1 68154 97 - 1
UUAAUUUUCAA------CUUGCUAUA--------GCUUUUGUAUCUCGGAU---GGUGGUGGUUUGAGUUAGGGUUGUUCACUGAUCCAGUGAAGUCACCUUUUGGUGAUUUAC
.(((((((.((------((((((((.--------(((((((.....)))).---))).)))))..))))))))))))(((((((...)))))))((((((....)))))).... ( -25.50)
>DroSim_CAF1 67316 97 - 1
UUCAUUUUCAA------CUUGCUAUA--------GCUUUUGUAUCUCGGAU---GGUGGUGGUUUGAGUUAGGGUUGUUCACUGAUCCAGUGAAGUCACCUUUUGCUGAUUUAC
.(((...((((------.(..((((.--------...((((.....)))).---.))))..).))))((.(((((..(((((((...)))))))...)))))..)))))..... ( -21.30)
>DroYak_CAF1 69182 98 - 1
UACGCGUUUAA------CUCAAUAUAGCUCUAUAGCUUUU-------GGAU---GGUGGUGGUUUAAGUUAGGGUUGUUCACCGAUCCAGAGAAGUCACCUUUUGGUGAUUUAC
...........------(((.....((((....))))..(-------((((---(((((..(..(......)..)..).)))).))))))))((((((((....)))))))).. ( -26.80)
>consensus
UUAAUUUUCAA______CUUGCUAUA________GCUUUUGUAUCUCGGAU___GGUGGUGGUUUGAGUUAGGGUUGUUCACUGAUCCAGUGAAGUCACCUUUUGGUGAUUUAC
...............................................((((...(((((..(..(......)..)..).)))).))))....((((((((....)))))))).. (-17.46 = -17.52 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:03 2006