Locus 5798

Sequence ID 3R_DroMel_CAF1
Location 15,143,544 – 15,143,636
Length 92
Max. P 0.535903
window9500

overview

Window 0

Location 15,143,544 – 15,143,636
Length 92
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 91.58
Mean single sequence MFE -17.72
Consensus MFE -13.60
Energy contribution -13.44
Covariance contribution -0.16
Combinations/Pair 1.05
Mean z-score -1.52
Structure conservation index 0.77
SVM decision value 0.00
SVM RNA-class probability 0.535903
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15143544 92 + 27905053
UUGAAAGUGCGCGGAAACGGACCGAAAUAAAGUCUAGAACGCUCUAGGAGCACCGAUUGAAACAGCAAACUAAUUUUAG-AGGGCAAAAC--AAA
(((...((((.((....)).............((((((....)))))).))))...........((...(((....)))-...))....)--)). ( -17.30)
>DroSec_CAF1 67188 92 + 1
UUGAAAGUGCGCGGAAACGGACCGAAAUAAAGUCUAGAAUGCUCUAGGAGCAGCGAUUGAAGCAGCAAACUAAUUUUAG-AGGGCAAAAC--AAA
(((....(((.((....))..((....((((((.(((..(((((...)))))((.......))......))))))))).-.)))))...)--)). ( -20.00)
>DroSim_CAF1 66360 92 + 1
UUGAAAGUGCGCGGAAACGGACCGAAAUAAAGUCUAGAAUGCUCUAGGAGCAGCGAUUGAAACAGUAAACUAAUUUUAG-AGGGCAAAAC--AAA
(((....(((.((....))..((....((((((.(((..(((((...)))))...((((...))))...))))))))).-.)))))...)--)). ( -17.40)
>DroEre_CAF1 66662 89 + 1
UUGAAAGUGCGCGGAAACGGACCGAAAUAAAGUCUAGAAUGCUCUAGGAGCAC------AAACAGAAAACUAAUUUUAGGAGGGCAAAACCAAAA
......((((.((....)).............((((((....)))))).))))------......................((......)).... ( -17.60)
>DroYak_CAF1 68271 86 + 1
UUGAAAGUGCGCGGAAACGGACCGAAAUAAAGUCUAGAAUGCUCUAGAAGCAC------AAACAGAAAACUAAUUUUAG-AGGGCAAAAU--AAA
......((((.((....)).............((((((....)))))).))))------....................-..........--... ( -16.30)
>consensus
UUGAAAGUGCGCGGAAACGGACCGAAAUAAAGUCUAGAAUGCUCUAGGAGCACCGAUUGAAACAGAAAACUAAUUUUAG_AGGGCAAAAC__AAA
.......(((.((....))..((....(((((((((((....))))))...............((....))..)))))...)))))......... (-13.60 = -13.44 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:02 2006