Locus 5797

Sequence ID 3R_DroMel_CAF1
Location 15,135,547 – 15,135,637
Length 90
Max. P 0.989839
window9499

overview

Window 9

Location 15,135,547 – 15,135,637
Length 90
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 89.91
Mean single sequence MFE -19.96
Consensus MFE -17.30
Energy contribution -17.74
Covariance contribution 0.44
Combinations/Pair 1.05
Mean z-score -2.07
Structure conservation index 0.87
SVM decision value 2.18
SVM RNA-class probability 0.989839
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15135547 90 - 27905053
UUCGUCUUCUGCGGGCGAUGGUAAUAAAAAUCAUUGGCAAUUGCCAAUAUUACGCUUU-UUAUCCAUAGCUAUAUAUAUAUGUAUAUAUUA
.((((((.....))))))..((((((.......(((((....)))))))))))(((..-........)))(((((((....)))))))... ( -18.41)
>DroSec_CAF1 59208 88 - 1
UCCGUCGUCUGCGGGCGAUGGUAAUAAAAAUCAUUGGCAAUUGCCAAUAUUACGCUUU-UUCUCCAUAGCUAUUUAUGUA--UAUAUAUUA
.((((((((....))))))))..(((((....((((((....)))))).....(((..-........)))..)))))...--......... ( -21.30)
>DroSim_CAF1 58112 88 - 1
UCCGUCGUCUGCGGGCGAUGGUAAUAAAAAUCAUUGGCAAUUGCCAAUAUUACGCUUU-UUCUCCAUAGCUAUUUAUGUA--UAUAUAUUA
.((((((((....))))))))..(((((....((((((....)))))).....(((..-........)))..)))))...--......... ( -21.30)
>DroEre_CAF1 58871 80 - 1
UCCGUCAUCUGCGGGCGAUGGUAAUAAAAAUCAUUGGCAAUUGCCAAUAUUACGCUUU-UUCUCUAUAGC--------UA--UAUAUAUUA
.(((((..(....)..)))))(((((......((((((....)))))).....(((..-........)))--------..--....))))) ( -15.10)
>DroYak_CAF1 60433 89 - 1
UCCGUCGUCCGCGGGCGAGGGUAAUAAAAAUCAUUGGCAAUUGCCAAUAUUACGCUUUUUUCUCUAUAGCCAUAGCUAUA--UAUAUAUUA
.((.(((((....))))).))(((((......((((((....))))))................((((((....))))))--....))))) ( -23.70)
>consensus
UCCGUCGUCUGCGGGCGAUGGUAAUAAAAAUCAUUGGCAAUUGCCAAUAUUACGCUUU_UUCUCCAUAGCUAUAUAUAUA__UAUAUAUUA
.((((((((....))))))))(((((......((((((....)))))).....(((...........)))................))))) (-17.30 = -17.74 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:01 2006