Locus 5796

Sequence ID 3R_DroMel_CAF1
Location 15,127,297 – 15,127,400
Length 103
Max. P 0.801641
window9498

overview

Window 8

Location 15,127,297 – 15,127,400
Length 103
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 75.79
Mean single sequence MFE -30.48
Consensus MFE -24.46
Energy contribution -23.86
Covariance contribution -0.60
Combinations/Pair 1.26
Mean z-score -1.08
Structure conservation index 0.80
SVM decision value 0.62
SVM RNA-class probability 0.801641
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15127297 103 + 27905053
CAGCAC--------UUUUCUCUAUAGCACUAGUCUUUUCUCGCAGUGCAGAGUUGCUUAAUUAGGCAGCUCCCAGCGACGGAGUUUCGACCUGGACGCCGUCUUGUCGCUU
.(((..--------...........(((((.((........))))))).(((((((((....))))))))).(((.(((((.((((......)))).))))))))..))). ( -32.00)
>DroSec_CAF1 51029 92 + 1
CAGCAA--------AAU-----------GUAGUAUUUUCUCGCAGUGCACAGUUGCUUAAUUAGGCAGCUUCCAACGAUGGAGUUUCGACCUGGACACCGUCUCGUCGCUU
..(((.--------..(-----------((((......)).))).)))..((((((((....))))))))((((....))))....((((..((((...)))).))))... ( -22.20)
>DroSim_CAF1 49997 92 + 1
CAGCAA--------UAU-----------GUAGUAUUUUCUCGCAGUGUAGAGUUGCUUAAUUAGGCAGCUCCCAACGACGGAGUUUCGACCUGGACGCCGUCUCGUCGCUU
.(((..--------..(-----------((((......)).)))((...(((((((((....)))))))))...))(((((.((((......)))).))))).....))). ( -26.70)
>DroEre_CAF1 50851 109 + 1
CGGCAUCAUGGCAGUCUCCCCUAUGAAUGUAGCCUUUUUUCCCAGUGCAGAGUUGCUUAAUUAGGCAGCU--CAGCGACGGAGUGCCGACCUGGACGCCGUCUCCUCGCCU
.(((.((((((.........))))))....................((.(((((((((....))))))))--).))(((((.((.((.....)))).))))).....))). ( -35.00)
>DroYak_CAF1 52305 110 + 1
CAGCAUCACGGCAAUCUCUUCUACACAUUUCGCAUUUUCUCGCAGUGCAGAGCUGCUUAAUUAGGCAGCUU-CGGCGACGAAGUGCCGACCUGGACGCCGUCUCGUCGCUU
.(((..((((((...................((........)).((.(((((((((((....))))))))(-(((((......)))))).))).)))))))...)..))). ( -36.50)
>consensus
CAGCAA________UAU___CUA_____GUAGUAUUUUCUCGCAGUGCAGAGUUGCUUAAUUAGGCAGCUCCCAGCGACGGAGUUUCGACCUGGACGCCGUCUCGUCGCUU
.(((........................................((...(((((((((....)))))))))...))(((((.((.((.....)))).))))).....))). (-24.46 = -23.86 +  -0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:00 2006