| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,122,416 – 15,122,519 |
| Length | 103 |
| Max. P | 0.635838 |
| Location | 15,122,416 – 15,122,519 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 86.46 |
| Mean single sequence MFE | -29.72 |
| Consensus MFE | -21.21 |
| Energy contribution | -21.05 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.24 |
| Mean z-score | -3.13 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.635838 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15122416 103 - 27905053 UUUUCCCAUUGCCGGCCUGUCGAAAUUAUGACAAUCCCGGCAAUCGAAUAAAACCGUU-------CCCCACGGCUGCCAAUUUUCGAAUUGUCGUAAAUUUGUUGCUUCA .......((((((((..(((((......)))))...)))))))).(((......(((.-------....)))((.((.(((((.(((....))).))))).)).))))). ( -24.60) >DroSec_CAF1 46589 102 - 1 UUUUC-CAUUGCCGGCCUGUCGAAAUUAUGACAAUCCCGGCAAUGGAAUAAAACCAUU-------CCCCACGGCUGCCAAUUUUCGAAUUGUCGUAAAUUUGUAGCUUCA ..(((-(((((((((..(((((......)))))...))))))))))))..........-------......((((((.(((((.(((....))).))))).))))))... ( -37.10) >DroSim_CAF1 45163 103 - 1 UUUUCCCAUUGCCGGCCUGUCGAAAUUAUGACAAUCCCGGCAAUGGAAUAAAACCGUU-------CCCCACGGCUGCCAAUUUUCGAAUUGUCGUAAAUUUGUAGCUUCA .....((((((((((..(((((......)))))...))))))))))............-------......((((((.(((((.(((....))).))))).))))))... ( -34.90) >DroEre_CAF1 46133 102 - 1 UUUUCCCAUUGUCGGCCUGUCGAAAUUAUGACAAUCCUGGCAAUGGAAUAAAACCGUU-------GCCCGCGGCUGCCAAUUUCCGAAUUGUCGUAAAUUUGCU-CUUCA .......((((.((((((((((......))))).....((((((((.......)))))-------)))...))))).))))...((((((......))))))..-..... ( -27.70) >DroYak_CAF1 40418 103 - 1 UUUUCCCAUUGUCGGCCUGUCGAAAAUAUGACAAUCCUGGCAAUAGAAUUAAACCGUU-------CUCCACGGCAGCCAAUUUUCGAAUUGUCGUAAAUUUGUUCCUUCA .......((((((((..(((((......)))))...))))))))(((((......)))-------))....((.(((.(((((.(((....))).))))).))))).... ( -20.50) >DroAna_CAF1 45769 110 - 1 UUUUCCCAUUGUUGGGCUGUCGAAAUUAUGACAGCCAUGGCAAUGGGCUUUAACGGUUGUUCUUUUCCAAUGGCUGCCAAUUUUCGGAAUGUCGUAAAUUUGUUACUCAA ....((((((((((((((((((......)))))))).))))))))))...((((((..(....)..)).(((((..((.......))...)))))......))))..... ( -33.50) >consensus UUUUCCCAUUGCCGGCCUGUCGAAAUUAUGACAAUCCCGGCAAUGGAAUAAAACCGUU_______CCCCACGGCUGCCAAUUUUCGAAUUGUCGUAAAUUUGUUGCUUCA .....((((((((((..(((((......)))))...)))))))))).......((((............))))..((.(((((.(((....))).))))).))....... (-21.21 = -21.05 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:59 2006