Locus 5793

Sequence ID 3R_DroMel_CAF1
Location 15,118,097 – 15,118,197
Length 100
Max. P 0.934292
window9493

overview

Window 3

Location 15,118,097 – 15,118,197
Length 100
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 93.73
Mean single sequence MFE -23.27
Consensus MFE -20.92
Energy contribution -20.87
Covariance contribution -0.06
Combinations/Pair 1.04
Mean z-score -1.64
Structure conservation index 0.90
SVM decision value 1.24
SVM RNA-class probability 0.934292
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15118097 100 - 27905053
GUAACUUGAGGCAUAAAUCGUACAAGAUAUGGCUUAUUCCUGAGCUGCCAUCAAACGGCGAAUUCUAACAUGCCUAACAUGUUCAAUGUCAGCUCAUUAC
((((....(((.((((..((((.....))))..)))).)))((((((((.......)))((.....((((((.....)))))).....))))))).)))) ( -24.80)
>DroSec_CAF1 42319 100 - 1
GUCACUUGAGGCAUAAAUCGUACAAGAUAUGGCUUAUUCCCGAGCUGCCAUCAAACGGCGAAUUCUAACAUGCCUAACAUGUUCAAUGUCAGCUCAUUAC
......((((.((((..((......)))))).)))).....((((((((.......)))((.....((((((.....)))))).....)))))))..... ( -24.10)
>DroSim_CAF1 40831 100 - 1
GUCACUUGAGGCAUAAAUCGUACAAGAUAUGGCUUAUUCCUGAGCUGCCAUCAAACGGCGAAUUCUAACAUGCCUAACAUGUUCAAUGUCAGCUCAUUAC
........(((.((((..((((.....))))..)))).)))((((((((.......)))((.....((((((.....)))))).....)))))))..... ( -24.70)
>DroEre_CAF1 41851 100 - 1
GUAACUUGGGGCAUAAAUCGUACAAGAUAUGGCUUAUUUCUGAGCUGCCAUCAAGCGGCGAAUUCUAACAUGCCUAACAUGUUCCAUGUCAGCUCAUUAC
((((..((((.((((..((......)))))).))))....(((((((((.......)))((.....((((((.....)))))).....)))))))))))) ( -23.70)
>DroYak_CAF1 36258 96 - 1
----CUUGAGGCAUAAAUCGCACAAGAUAUGGCUUAUUUCUGAGCUGCCAUCAAGCGGCAAAUUCUAACAUGCCCAACAUGUUCAAUGUCAGCUCAUUAC
----..((((.((((..((......)))))).))))....(((((((.(((..(((((((..........))))......)))..))).))))))).... ( -23.30)
>DroAna_CAF1 41584 100 - 1
GUAACUUGGGGCAUAAAUCGUACAAGAUAUGGCUUAUUUCUGAGCUGCCAUCAAACGGAAAAUUCUAACAUGCCUAACAUGUUCAAUUUGAGCUCAUUAC
((((..((((.((((..((......)))))).))))....((((((.((.......)).(((((..((((((.....)))))).))))).)))))))))) ( -19.00)
>consensus
GUAACUUGAGGCAUAAAUCGUACAAGAUAUGGCUUAUUCCUGAGCUGCCAUCAAACGGCGAAUUCUAACAUGCCUAACAUGUUCAAUGUCAGCUCAUUAC
......((((.((((..((......)))))).)))).....((((((((.......))).......((((((.....)))))).......)))))..... (-20.92 = -20.87 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:55 2006