Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 15,112,039 – 15,112,137 |
Length | 98 |
Max. P | 0.777702 |
Location | 15,112,039 – 15,112,137 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 79.88 |
Mean single sequence MFE | -33.27 |
Consensus MFE | -20.86 |
Energy contribution | -20.67 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.09 |
Mean z-score | -1.84 |
Structure conservation index | 0.63 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.777702 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15112039 98 - 27905053 AGCUGC------UG-CUGCUGCCGAUGAUGCUGCA------UGCCCCAGCGCAUGCUUCAUCUGUUGCAUGUAGUUACCGCUUUCAUGGCUAAGUGGUUGACUGGACAUGG .((.((------..-..)).))((((((((..(((------(((......))))))..)))).))))((((((((((((((((........)))))).)))))..))))). ( -34.70) >DroVir_CAF1 44322 84 - 1 --------------------GCUGA-UGCGCUGCA------UGCCGCAGCGCAUGCUUCAUCUGUUGCAUGUAGUUACCGCUUUCAUGGCUAAGUGGUUGGCUGGACAUGG --------------------((..(-((((((((.------....)))))))))))...........((((((((((((((((........)))))).)))))..))))). ( -32.30) >DroGri_CAF1 53770 85 - 1 --------------------GCUGAGUGCGCUGCA------UGCCGCAGUGCAUGCUUCAUCUGUUGCAUGUAGUUACCGCUUUCAUGGCUAAGUGGUUGGCUGGACAUGG --------------------((...(((((((((.------....)))))))))))...........((((((((((((((((........)))))).)))))..))))). ( -30.30) >DroWil_CAF1 26627 109 - 1 UGU-GCCAUGUCCGUGGACUGCGGAGGA-GCUGCAGACCUAUGGACCAGCGCAUGCUUCAUCUGUUGCAUGUAGUUACCGCUUUCAUGGCUAAGUGGUUGACUGGACAUGG ...-.((((((((((((.((((((....-.))))))..)))))))(((((((((((..(....)..))))))....(((((((........))))))).).)))).))))) ( -42.20) >DroMoj_CAF1 44044 82 - 1 --------------------GCUGA-UG--CUGCA------UGCCGCAGCGCAUGCUUCAUCUGUUGCAUGUAGUUACCGCUUUCAUGGCUAAGUGGUUGGCUGGACAUGG --------------------((.((-((--..(((------(((......))))))..)))).))..((((((((((((((((........)))))).)))))..))))). ( -29.70) >DroAna_CAF1 35222 86 - 1 GGUUGC------U-------------GAUGCUGCA------UGCCCCAGCGCAUGCUUCAUCUGUUGCAUGUAGUUACCGCUUUCAUGGCUAAGUGGUUGACUGGACAUGG ....((------.-------------((((..(((------(((......))))))..)))).))..((((((((((((((((........)))))).)))))..))))). ( -30.40) >consensus ____________________GCUGA_GA_GCUGCA______UGCCCCAGCGCAUGCUUCAUCUGUUGCAUGUAGUUACCGCUUUCAUGGCUAAGUGGUUGACUGGACAUGG .............................((((.............))))((((((..(....)..))))))(((((((((((........)))))).)))))........ (-20.86 = -20.67 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:53 2006