| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,110,810 – 15,110,923 |
| Length | 113 |
| Max. P | 0.717307 |
| Location | 15,110,810 – 15,110,923 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.38 |
| Mean single sequence MFE | -29.68 |
| Consensus MFE | -24.79 |
| Energy contribution | -24.98 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.717307 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15110810 113 + 27905053 -------CUAUCAAUUGCCCAAAAACGUUGCACAAAUUGAAACGUUUGACUAUAUUUGGGUCAGCUAAAGUGAUCGCAUUAACAAGUCAAUAGGAGUCCAGCAUCCUUUUAGGGCAUUGC -------....((((.((((..(((((((.((.....)).)))))))((((.....(((((((.(....)))))).))......))))((.((((........)))).)).)))))))). ( -26.70) >DroPse_CAF1 41358 120 + 1 CGGUUGCCUAUCAAUUGCCCAAAAACGCUGCACAAAUUGAAACGUUUGACUAUAUUUGGGUCAGUUAAAGUGAUCACAUUAACAAGUCAAUAGGAGUGCAGCAUCCUUUUAGGGCAUUGC ...........((((.((((.((((.(((((((..(((((......(((((.......)))))(((((.((....)).)))))...)))))....)))))))....)))).)))))))). ( -32.40) >DroSec_CAF1 35282 113 + 1 -------CUAUCAAUUGCCCAAAAACGUUGCACAAAUUGAAACGUUUGACUAUAUUUGGGUCAGCUAAAGUGAUCGCAUUAACAAGUCAAUAGGAGUCCAGCAUCCUUUUAGGGCAUUGU -------....((((.((((..(((((((.((.....)).)))))))((((.....(((((((.(....)))))).))......))))((.((((........)))).)).)))))))). ( -26.90) >DroEre_CAF1 34358 113 + 1 -------CUAUCAAUUGCCCAAAAACGUUGCACAAAUUGAAACGUUUGACUAUAUUUGGGUCAGCUAAAGUGAUCGCAUUAACAAGUCAAUAGGAGUCCGGCCUCCUUUUAGGGCAUUGC -------....((((.((((..(((((((.((.....)).)))))))((((.....(((((((.(....)))))).))......))))((.(((((......))))).)).)))))))). ( -28.90) >DroWil_CAF1 25700 113 + 1 -------CUAUCAAUUGCCCAAAAGCGUUGCACAAAUUGAAACGUUUGACUAUAUUUGGGUCAGUUAAAGUGAUCACAUUAACAAGUCAAUAGGAGUGCAAUAUCCUUUUAGGGCAUCAU -------........((((((((((.(((((((..(((((......(((((.......)))))(((((.((....)).)))))...)))))....)))))))...))))).))))).... ( -30.80) >DroPer_CAF1 37881 120 + 1 CGGUUGCCUAUCAAUUGCCCAAAAACGCUGCACAAAUUGAAACGUUUGACUAUAUUUGGGUCAGUUAAAGUGAUCACAUUAACAAGUCAAUAGGAGUGCAGCAUCCUUUUAGGGCAUUGC ...........((((.((((.((((.(((((((..(((((......(((((.......)))))(((((.((....)).)))))...)))))....)))))))....)))).)))))))). ( -32.40) >consensus _______CUAUCAAUUGCCCAAAAACGUUGCACAAAUUGAAACGUUUGACUAUAUUUGGGUCAGCUAAAGUGAUCACAUUAACAAGUCAAUAGGAGUCCAGCAUCCUUUUAGGGCAUUGC ...............(((((..(((((((.((.....)).)))))))((((.....(((((((.......))))).))......))))((.((((........)))).)).))))).... (-24.79 = -24.98 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:52 2006