| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,165,164 – 2,165,257 |
| Length | 93 |
| Max. P | 0.998145 |
| Location | 2,165,164 – 2,165,257 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 72.20 |
| Mean single sequence MFE | -24.73 |
| Consensus MFE | -14.47 |
| Energy contribution | -15.37 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.59 |
| SVM decision value | 3.02 |
| SVM RNA-class probability | 0.998145 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2165164 93 + 27905053 GGGCAACCCAGUUAACGGAGGAGAGGCUACUGUCUUUCGACUGGGUAUGAAAGGGCGUUAAGGGUAUAUACUAAAUAUGU--UAGAAGAUUAAUA---- .....(((((((...(((((((.((....)).)))))))))))))).......(((((....(((....)))....))))--)............---- ( -25.30) >DroSec_CAF1 306943 97 + 1 GGGCAACCCAGUUAACGGAGGAGAGGCUACUGUCUUUGGACUGGGUAUGAAAGGGUGCUAAGGGUAUAUAGUAAAUAUGU--UAGAAGAAUGACAUUAA ..((.((((((((....(((((.((....)).))))).))))))))........((((.....))))...))....((((--((......))))))... ( -24.40) >DroAna_CAF1 278492 93 + 1 GGGCAACCCAGUUAACUGAGGAGAGGCUACUGUUUUUAUACUUAGUAAUAGUAGUAUUCGAGGGUAUA--CUCAAUGUAUGGUC----UUUUAUUUUAU ((....))(((....))).(((...(((((((((.(((....))).))))))))).)))((((.((((--(.....))))).))----))......... ( -24.50) >consensus GGGCAACCCAGUUAACGGAGGAGAGGCUACUGUCUUUAGACUGGGUAUGAAAGGGAGUUAAGGGUAUAUACUAAAUAUGU__UAGAAGAUUAAUAUUA_ .....(((((((...(((((((.((....)).))))))))))))))..................................................... (-14.47 = -15.37 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:36 2006