Locus 5788

Sequence ID 3R_DroMel_CAF1
Location 15,105,722 – 15,105,828
Length 106
Max. P 0.611888
window9486

overview

Window 6

Location 15,105,722 – 15,105,828
Length 106
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 90.75
Mean single sequence MFE -28.50
Consensus MFE -26.75
Energy contribution -26.65
Covariance contribution -0.10
Combinations/Pair 1.19
Mean z-score -1.05
Structure conservation index 0.94
SVM decision value 0.16
SVM RNA-class probability 0.611888
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15105722 106 - 27905053
CAAUUUCAUAUGCAUAAAUGGCCAUAAAUGUGGCUUUAUUGAAUCCACGAUCUUCCAGGCGGCUGCCCACGGUUGUCAACGGUUUCGAUUCGGGCCCGUGGCUUAU
...................((((((....(.(((((.((((((.((..(......).((((((((....))))))))...)).))))))..))))))))))))... ( -27.80)
>DroSec_CAF1 30310 106 - 1
CAAUUUCAUAUGCAUAAAUGGCCAUAAAUGUGGCCUUAUUGAAUCCACGAUCUUCCAGGCGGCUGCCCACGGUUGUCAACGGCUUCGAUUCGGGCCCGUGGCUUAU
...................((((((....)))))).........(((((........((((((((....))))))))...(((((......))))))))))..... ( -31.30)
>DroSim_CAF1 28403 106 - 1
CAAUUUCAUAUGCAUAAAUGGCCAUAAAUGUGGCCUUAUUGAAUCCACGAUCUUCCAGGCGGCUGCCCACGGUUGUCAACGGCUUCGAUUCGGGCCCGUGGCUUAU
...................((((((....)))))).........(((((........((((((((....))))))))...(((((......))))))))))..... ( -31.30)
>DroEre_CAF1 29750 106 - 1
CAAUUUCAUAUGCAUAAAUGGCCAUAAAUGUGGCUUUAUUGAAUCCACGAUCUUCCAGACGACUGCCCACGGUUGUCAACGGCUGCGUUUCGGGCCCGUGGCUUAU
............((.....((((((....))))))....))...(((((........((((((((....))))))))...((((........)))))))))..... ( -30.00)
>DroYak_CAF1 23351 106 - 1
CAAUUUCAUAUGCAUAAAUGGCCAUAAAUGUGGCUUUAUUGAAUCCACGAUCUUCCAGGCGACUGCCCACGGUUGUCAACGGCUUCGAUUGAGGCCCGUGGCUUAU
............((.....((((((....))))))....))...(((((........((((((((....))))))))...((((((....)))))))))))..... ( -33.20)
>DroAna_CAF1 29184 89 - 1
CUAUUUCAUAUGCAUAAAUGGCCAUAAAUGUUGCUUUAUUGAUUCCACGAUCUUCCAGGCGACUGCCCACGGUUGUCAAC-----------------GUGGUUUAU
.............(((((((((.......(((((((....((((....))))....))))))).)))((((........)-----------------))))))))) ( -17.40)
>consensus
CAAUUUCAUAUGCAUAAAUGGCCAUAAAUGUGGCUUUAUUGAAUCCACGAUCUUCCAGGCGACUGCCCACGGUUGUCAACGGCUUCGAUUCGGGCCCGUGGCUUAU
............((.....((((((....))))))....))...(((((........((((((((....))))))))...(((((......))))))))))..... (-26.75 = -26.65 +  -0.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:49 2006