Locus 5785

Sequence ID 3R_DroMel_CAF1
Location 15,082,777 – 15,082,871
Length 94
Max. P 0.913434
window9482

overview

Window 2

Location 15,082,777 – 15,082,871
Length 94
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 75.15
Mean single sequence MFE -25.36
Consensus MFE -13.06
Energy contribution -14.48
Covariance contribution 1.42
Combinations/Pair 1.12
Mean z-score -2.07
Structure conservation index 0.52
SVM decision value 1.09
SVM RNA-class probability 0.913434
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15082777 94 + 27905053
-CGCAAUUAAAUCGAUUUCAGUUU--------CGAUGC---AUUCCG-----------UGUUUGCAAUUUGCGAGACAUCAUCGACCUCAAUUUGCAUAAUCGAUUGGUGAUUGCAG---
-.(((((((((((((((.(((..(--------(((((.---.....(-----------(((((((.....)).)))))))))))).......)))...))))))))..)))))))..--- ( -24.60)
>DroSec_CAF1 7647 94 + 1
-CGCAAUUAAAUCGAUUUCAGUUU--------CGAUGC---AUUCCG-----------UGUUUGCAAAUUGCGAGACAUCAUCGACCUCAAUUUGCAUAAUCGAUUGGUGAUUGCGG---
-((((((((((((((((.......--------.(((((---.....)-----------))))((((((((((((.......)))....))))))))).))))))))..)))))))).--- ( -27.00)
>DroSim_CAF1 5585 94 + 1
-CGCAAUUAAAUCGAUUUCAGUUU--------CGAUGC---AUUCCG-----------UGUUUGCAAAUUGCGAGACAUCAUCGACCUCAAUUUGCAUAAUCGAUUGGUGAUUGCAG---
-.(((((((((((((((.......--------.(((((---.....)-----------))))((((((((((((.......)))....))))))))).))))))))..)))))))..--- ( -25.30)
>DroEre_CAF1 7376 93 + 1
-CGCAAUUAAAUCGAUUUCAGUUU--------CGAAGC---AUUCCG-----------UGUUUGCAAA-UGCGAGACAUCAUCGACCCCAAUUUGCAUAAUCGAUGGCUGAUUGCAG---
-.((((((...((((........)--------)))(((---.....(-----------(((((((...-.)).))))))((((((...............)))))))))))))))..--- ( -23.36)
>DroAna_CAF1 5710 101 + 1
UCGCAAUUAAAACGAUUUUAAUUUGAAGUGUUCGCUGCGAAAAUCCA-----------CGCUU-CAA-CUGC--GACAUCAUCGACCGCA-UUUGCAUAAUCGAUUGGUGAUUGCAA---
(((((((((((.....))))))((((((((((((...)))......)-----------)))))-)))-.)))--))(((((((((..((.-...))....)))).))))).......--- ( -23.30)
>DroPer_CAF1 1536 102 + 1
-UGCAAUUGAAAUGAUUUCGCGUU--------UGAAGA---UUUCGAUAUCAUAUUGAUGCUU-CGUAUUGC--AAA---AUGCAUUUCCAUUUGCAUAAUCGAUGGCUGAUUGCCGAUU
-(((((..((((((((((.(((..--------(((((.---..((((((...))))))..)))-))...)))--.))---)).))))))...))))).......((((.....))))... ( -28.60)
>consensus
_CGCAAUUAAAUCGAUUUCAGUUU________CGAUGC___AUUCCG___________UGUUUGCAAAUUGCGAGACAUCAUCGACCUCAAUUUGCAUAAUCGAUUGGUGAUUGCAG___
..(((((((.(((((((................((........)).................(((((((((.................))))))))).)))))))...)))))))..... (-13.06 = -14.48 +   1.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:45 2006