Locus 5780

Sequence ID 3R_DroMel_CAF1
Location 15,070,259 – 15,070,365
Length 106
Max. P 0.605714
window9467

overview

Window 7

Location 15,070,259 – 15,070,365
Length 106
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 78.60
Mean single sequence MFE -37.03
Consensus MFE -20.10
Energy contribution -19.13
Covariance contribution -0.97
Combinations/Pair 1.42
Mean z-score -1.81
Structure conservation index 0.54
SVM decision value 0.15
SVM RNA-class probability 0.605714
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15070259 106 + 27905053
CUAAUGCUGUGGUCGUAGCACACCUUUGCUGCCUCCGCAUUCCCGGAGUUCGGACAGUGCUCCCGUUGGCAGGUGAAGGGCACUAGGUCAUCUAUUCGGGAUUAGA
((((...(((((..((((((......))))))..))))).(((((((.....((((((((((((.......))....)))))))..))).....))))))))))). ( -40.90)
>DroPse_CAF1 6950 98 + 1
CUGAUGCUAUGAUCAUAGCAGACCUUGGCUGCCUCGGCAUUCCCAGCAUUCGGGCAAUGCUCGCGCUGGCAGGUGAAGGGCACAAGGUCGUCUAUAAA--------
....((((((....))))))(((((((..(((((...((((.(((((...(((((...))))).)))))..))))..)))))))))))).........-------- ( -39.70)
>DroGri_CAF1 8772 102 + 1
CUGAUGCUAUGAUCAUAGCACACCUUGGCCGCCUCAGCGUUUCCGGCAUUGGGGCAAUGUUCACGCUGACAGGUGAAUGGAACUAGAUCAUCUGUUCAAU----AG
.(((.((.((((((.(((....((((.(((...(((((((....(((((((...))))))).)))))))..))).)).))..)))))))))..)))))..----.. ( -30.10)
>DroMoj_CAF1 7646 104 + 1
CUAAUGCUGUGAUCAUAGCAAACUUUGGCCGCCUCAGCAUUGCCAGCAUUGGGGCAAUGCUCGCGUUGACAGGUGAAUGGAACUAGGUCAUCUGCACAAU--UGGA
((((((((((....))))))....(((..(((...(((((((((........))))))))).))).((.(((((((.((....))..)))))))))))))--))). ( -33.20)
>DroAna_CAF1 7219 102 + 1
CUUAUGCUGUGAUCGUAGCAGACCUUGGCCGCCUCCGCGUUGCCGGCAUUGGGACAGUGCUCCCGUUGGCAAGUGAAGGGCACCAGGUCAUCUGAAAAGCA----A
....(((((......)))))(((((.((..((((.(((.((((((((...((((......)))))))))))))))..)))).)))))))............----. ( -38.60)
>DroPer_CAF1 6962 98 + 1
CUGAUGCUAUGAUCAUAGCAGACCUUGGCUGCCUCGGCAUUCCCAGCAUUCGGGCAAUGCUCGCGCUGGCAGGUGAAGGGCACAAGGUCGUCUAUAAA--------
....((((((....))))))(((((((..(((((...((((.(((((...(((((...))))).)))))..))))..)))))))))))).........-------- ( -39.70)
>consensus
CUGAUGCUAUGAUCAUAGCAGACCUUGGCCGCCUCAGCAUUCCCAGCAUUCGGGCAAUGCUCGCGCUGGCAGGUGAAGGGCACUAGGUCAUCUAUAAA_______A
....((((((....))))))..((((.(((...(((((......((((((.....))))))...)))))..))).))))........................... (-20.10 = -19.13 +  -0.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:32 2006