Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,158,261 – 2,158,360 |
Length | 99 |
Max. P | 0.844849 |
Location | 2,158,261 – 2,158,360 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 83.50 |
Mean single sequence MFE | -21.15 |
Consensus MFE | -15.12 |
Energy contribution | -14.62 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.24 |
Mean z-score | -1.97 |
Structure conservation index | 0.72 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.844849 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2158261 99 + 27905053 UGGCCAAAAUGUCGGUGGCGAUGGCGUGAAACAAUGCAAAAUGGUAGUGGCGUCAAGAAAAAAAAGGAAAUUCGACGUUGAAAAAAACGAGAAAUUGAA ..((((....((((....)))).((((......))))....))))...((((((...................))))))........(((....))).. ( -17.31) >DroSec_CAF1 300914 99 + 1 UGGCCAAAAUGUCGGCGGCGAUGGCGUGAAACAAUGCAAAAUGGCAGUGGCGCCAAGGAAAAAAAGAUAAUUCAACGGCUUAAAAAACGAGAAAUUGAA ..((((...(((((...(((.((........)).)))....))))).))))(((...(((..........)))...)))........(((....))).. ( -23.10) >DroSim_CAF1 316566 99 + 1 UGGCCAAAAUGUCGGCGGCGAUGGCGUGAAACAAUGCAAAAUGGCAGUGGCGCCAAGGAAAAAAAGAUAAUUCAACGGCGUAAAAAACGAGAAAUUGAA ..((((...(((((...(((.((........)).)))....))))).))))(((...(((..........)))...)))........(((....))).. ( -23.60) >DroAna_CAF1 272733 90 + 1 CAGCCAAAAUGUCGACGGUGAUGUCGUGAAACAAUGCAAAAUGGCGAUGGCGCCAACAAAAA------ACUUCAACGGCGUC---AACUUAAAAUUGAA ..((((...((((((((....))))).........)))...))))..(((((((........------........))))))---)............. ( -20.59) >consensus UGGCCAAAAUGUCGGCGGCGAUGGCGUGAAACAAUGCAAAAUGGCAGUGGCGCCAAGAAAAAAAAGAUAAUUCAACGGCGUAAAAAACGAGAAAUUGAA ..((((...(((((...(((.((........)).)))....))))).))))(((......................))).................... (-15.12 = -14.62 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:35 2006