| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,058,642 – 15,058,736 |
| Length | 94 |
| Max. P | 0.913657 |
| Location | 15,058,642 – 15,058,736 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 75.98 |
| Mean single sequence MFE | -28.20 |
| Consensus MFE | -19.55 |
| Energy contribution | -20.75 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.69 |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.913657 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15058642 94 + 27905053 -GUAAUCUGAGACUU--AUGCA-UUUACUAGUGAU--------UCCACUAACCGUGAAGUCAUGGUGAGAAUCUCGGGCAGGAAUGGUGCUGCCAUGGCAGGUUCU -....((((((((((--.....-.....(((((..--------..)))))((((((....)))))))))..)))))))..(((((....((((....))))))))) ( -26.90) >DroSec_CAF1 4615 92 + 1 -AUAGUCUGAGAA----UAGAA-UUUACUAGUGAU--------CCCACUUACCGUGAAGUCAUGGUGAGAAUCUCGGGCAGAAAUGGUGCUGCCAUGGCAGGUUCU -...((((((((.----(((..-....))).....--------....(((((((((....)))))))))..))))))))..........((((....))))..... ( -31.30) >DroSim_CAF1 4639 92 + 1 -GUAGUCUAGGAG----AUGGA-UUUACUAGUGAU--------CCCACUUACCGUGAUGUCAUGGUGAGAAUCUCAGGCAGGAAUGGUGCUGCCAUGGCAGGUUCU -...(((...(((----(((((-((.......)))--------))..(((((((((....))))))))).))))).(((((........)))))..)))....... ( -33.40) >DroEre_CAF1 4772 101 + 1 GGUAGUCUGA-AG----AUGCAGUUUUGAAGUGAUGCAAGUGAUGCAGUUACCGUGAAGUCAUGGUAAGAAUUUCGGGCAGGAACGGUGCUGCCAUGGCGGGUUCU ....((((((-((----.((((..((((.(....).))))...)))).((((((((....))))))))...)))))))).(((((....((((....))))))))) ( -32.70) >DroYak_CAF1 4868 98 + 1 GGUAGUCUGAAAG----AUGCA-UUUAAAAAUAAUCCAAU---CCCACUUACCGCGAAGUCAUGGUAAGAAUCUCGGGCAGGAAAGGUGCUGCCAUGGCAGGUUCU ........(((..----.(((.-.................---....(((((((.(....).))))))).......(((((........)))))...)))..))). ( -22.20) >DroAna_CAF1 4888 92 + 1 -UAAGUCCUAGAUAUAAUUGAA-UUUAAA--GAAU--------U--UCUUACCGGGAUGUCAUGGUUAGAAUCUCGGGUAGGAAUGGCGCUGCCAUUGCCGGCUCA -.....................-......--((..--------(--(((.((((.(....).)))).))))..))((((.((((((((...)))))).)).)))). ( -22.70) >consensus _GUAGUCUGAGAG____AUGCA_UUUACAAGUGAU________CCCACUUACCGUGAAGUCAUGGUGAGAAUCUCGGGCAGGAAUGGUGCUGCCAUGGCAGGUUCU ....((((((((............(((....))).............(((((((((....)))))))))..))))))))..........((((....))))..... (-19.55 = -20.75 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:30 2006