Locus 5777

Sequence ID 3R_DroMel_CAF1
Location 15,054,883 – 15,054,991
Length 108
Max. P 0.661031
window9464

overview

Window 4

Location 15,054,883 – 15,054,991
Length 108
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 81.17
Mean single sequence MFE -31.18
Consensus MFE -17.76
Energy contribution -17.84
Covariance contribution 0.08
Combinations/Pair 1.12
Mean z-score -1.99
Structure conservation index 0.57
SVM decision value 0.27
SVM RNA-class probability 0.661031
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15054883 108 + 27905053
AUCACGACGCCGGCGAAGGCGUCCCAAUUCGUAGGGACCAGAAUAGAUUAUCGCGUCGUUAGGCAUGGAAUAAUAAUAUAUGGGUACUUAAUUAUAUCUUA--UGGAAAU
.(((((((((..((....))(((((........)))))..............))))))).............((((.((((((........)))))).)))--).))... ( -25.70)
>DroSec_CAF1 871 96 + 1
AUCCCGACGCCGGCGAAGGCGUCCCAAUUCGUAGGGACCAGAAUAGAUUAUCGCGUCGUUAGGCAUAG-AUAAUAAUAUAUGGGUCC-----------UUA--UGGAAAU
.....((((((......))))))....((((((((((((...(((.((((((..(((....)))...)-)))))....))).)))))-----------)))--))))... ( -37.90)
>DroSim_CAF1 871 97 + 1
AUCCCGACGCCGGCGAAGGCGUCCCAAUUCGUAGGGACCAGAAUAGAUUAUCGCGUCGUUAGGCAUGGAAUAAUAAUAUAUGGGUCC-----------UUA--UGGAAAU
.....((((((......))))))....((((((((((((...(((.(((((((.(((....))).))..)))))....))).)))))-----------)))--))))... ( -33.70)
>DroEre_CAF1 872 96 + 1
AUCCCGCCGGCGGCGAAGGCGUCCCACUUCGUAGGGGCCCGAAUUGAUUAUCGCGUCGUUAGGCAUGGCAUCAU---AAAUGUGUCC-----------UAAAUUAGAAAU
.....((((((((((..((.(((((........)))))))((........)).))))))).)))..(((((...---....))))).-----------............ ( -27.50)
>DroYak_CAF1 871 90 + 1
AUCCCGCCGGCGACGAAGGCGUCCCACUUCGUAGGGACCCGAAUAGGUUAUCGCGUCGUUCGGCAUGGCAUCAU---AAAUGUGUCU-----------UAAAUU------
.....((((((((((..((.(((((........)))))))((........)).))))).)))))..(((((...---....))))).-----------......------ ( -31.10)
>consensus
AUCCCGACGCCGGCGAAGGCGUCCCAAUUCGUAGGGACCAGAAUAGAUUAUCGCGUCGUUAGGCAUGGAAUAAUAAUAUAUGGGUCC___________UUA__UGGAAAU
........((((((((..(((((((........)))))..((........)))).))))).))).............................................. (-17.76 = -17.84 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:29 2006