Locus 5776

Sequence ID 3R_DroMel_CAF1
Location 15,052,321 – 15,052,437
Length 116
Max. P 0.791282
window9463

overview

Window 3

Location 15,052,321 – 15,052,437
Length 116
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 92.59
Mean single sequence MFE -43.82
Consensus MFE -35.14
Energy contribution -36.18
Covariance contribution 1.04
Combinations/Pair 1.08
Mean z-score -1.66
Structure conservation index 0.80
SVM decision value 0.59
SVM RNA-class probability 0.791282
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15052321 116 + 27905053
UCGAUGUUCGUGCAAAACACUUCGAUUCCGAUAGGCGGAUGCUAUCGAUUUCGGCGAUGCCCCUUGGUCACACUUGGUGGUGGGCGCUGCCCGUCGCCGACUAUCGAUAGCACAAG
((((.((..((.....)))).)))).((((.....))))((((((((((.(((((((((((((..(......)..)).)))((((...))))))))))))..)))))))))).... ( -49.00)
>DroSec_CAF1 54703 116 + 1
UCGAUGUUCGUGCAAAACACUUCGAUUCCGAUAGGCGGAUGCUAUCGAUUUCGGCGAGGCCCCUUGGUCACACUUGGUGGUGGGCGCUGCCCGUCGCCGACUAUCGAUAGCACAAG
((((.((..((.....)))).)))).((((.....))))((((((((((.(((((((.(((((..(......)..)).)))((((...)))).)))))))..)))))))))).... ( -47.80)
>DroSim_CAF1 54618 116 + 1
UCGAUGUUCGUGCAAAACACUUCGAUUCCGAUAGGCGGAUGCUAUCGAUUUCGGCGAGGCCCCUUGGUCACACUUGGUGGUGGGCGCUGCCCGUCGCCGACUAUCGAUAGCACAAG
((((.((..((.....)))).)))).((((.....))))((((((((((.(((((((.(((((..(......)..)).)))((((...)))).)))))))..)))))))))).... ( -47.80)
>DroEre_CAF1 56500 116 + 1
UCGAUGUUCAUGCAAAACACUUCGAUUCCGAUAGGCGGACGGUAUCGAUUUUGCCGCGACUCCAUGGUCACACUUGGGGGUGGGCGCAGCCCGUCGCCGACUAUCGAUAGCAUAUG
((((((.((..((((((....(((((.(((.........))).))))))))))).(((((((((.(......).))))...((((...))))))))).)).))))))......... ( -37.10)
>DroYak_CAF1 78248 116 + 1
UCGAUGUUCAUGCAAAACACUUCGAUUCCGAUAGGCGGAUGGUAUCGAUUUUGCCAAGGCCCCAUGGUCACACUUGGUGGUGGGCGCAGCCAGUCGCCGACUACCGAUAGCACAUA
...((((.(..((((((....(((((((((.....))))....)))))))))))...((((....))))....((((((((.(((((.....).)))).))))))))..).)))). ( -37.40)
>consensus
UCGAUGUUCGUGCAAAACACUUCGAUUCCGAUAGGCGGAUGCUAUCGAUUUCGGCGAGGCCCCUUGGUCACACUUGGUGGUGGGCGCUGCCCGUCGCCGACUAUCGAUAGCACAAG
((((((((.......))))..)))).((((.....)))).(((((((((.(((((((.(((((..(......)..)).)))((((...)))).)))))))..)))))))))..... (-35.14 = -36.18 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:28 2006