Locus 5775

Sequence ID 3R_DroMel_CAF1
Location 15,047,334 – 15,047,434
Length 100
Max. P 0.963730
window9462

overview

Window 2

Location 15,047,334 – 15,047,434
Length 100
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 89.56
Mean single sequence MFE -32.02
Consensus MFE -27.78
Energy contribution -27.90
Covariance contribution 0.12
Combinations/Pair 1.14
Mean z-score -1.83
Structure conservation index 0.87
SVM decision value 1.56
SVM RNA-class probability 0.963730
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15047334 100 + 27905053
AGAGCACUCUUUUUAUGGCGGUAGGGGAUCAAGUUCAACUUUCGGCCGAGUUCAUCUGGGGGGUUAUUCUCCAAACAAGGUGGAUGAUUUAGGAGUGUGU-
...((((((((....((((.(.((..((......))..))..).)))).((((((((.(((((....))))).....)))))))).....))))))))..- ( -32.80)
>DroSec_CAF1 49822 99 + 1
AGAGCACUCUU-UUAUGGCGGUGGGGGAUCAAGUUCAACUUUCUGCCGAGUUCAUCUGGGGGGUUCCACUCCAAACAAGGUGGAUGAUUUAUGAGUGUUC-
.((((((((..-...((((((.((..((......))..))..)))))).((((((((.((((......)))).....)))))))).......))))))))- ( -36.30)
>DroSim_CAF1 49486 99 + 1
AGAGCACUCUU-UUAUGGCGGUGGGGGAUCAAGUUCAACUUUCGGCCGAGUUCAUCUGGGGGGUUCUUCUCCAAACAAGGUGGAUGAUUUAGGAGUGUGU-
...((((((((-..(((((.(.((..((......))..))..).)))..((((((((.(((((....))))).....)))))))).))..))))))))..- ( -33.30)
>DroEre_CAF1 51636 98 + 1
AGAGCACUGUU-UUAUGGCGGGAGGAGAUCAAGUUUAACUUUCGGCCGAGUUCAUCUGGGGG--UUUUCCCCAAACAAGGUGGAUGAUUUAGGAGUGUGUG
...(((((.((-..(((((.(((((.............))))).)))..((((((((.((((--....)))).....)))))))).))..)).)))))... ( -31.12)
>DroYak_CAF1 73366 97 + 1
AGAGCACUGUU-UUAUGGCGGGAGGAGAUCAAGCUUAACUUUCGGCCGAGUUCAUCUGGGGU--UUUUCCCCAAACAAGGCGAAUGAUUUAGGAGUGUGU-
...(((((.((-..((.(((..((..((......))..))..))(((..(((....(((((.--....))))))))..)))...).))..)).)))))..- ( -26.60)
>consensus
AGAGCACUCUU_UUAUGGCGGUAGGGGAUCAAGUUCAACUUUCGGCCGAGUUCAUCUGGGGGGUUCUUCUCCAAACAAGGUGGAUGAUUUAGGAGUGUGU_
...((((((((....(((((..((..((......))..))..).)))).((((((((.((((......)))).....)))))))).....))))))))... (-27.78 = -27.90 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:27 2006