Locus 5772

Sequence ID 3R_DroMel_CAF1
Location 15,031,846 – 15,031,958
Length 112
Max. P 0.995106
window9457

overview

Window 7

Location 15,031,846 – 15,031,958
Length 112
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 77.01
Mean single sequence MFE -24.46
Consensus MFE -15.54
Energy contribution -15.72
Covariance contribution 0.19
Combinations/Pair 1.15
Mean z-score -2.56
Structure conservation index 0.64
SVM decision value 2.54
SVM RNA-class probability 0.995106
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15031846 112 - 27905053
-----GAUCCCAGGAUUGCAGCAAUAUUAUGGCGGCUUAAAAAAAUAUCGUGUAAGCCAUUAAUCAAAUAUUAAUUACA-ACAAAUUGAAUAAUUUGUAAUAUCAGA--UAUCUUGCUGU
-----((((....))))(((((((.((..(((.((((((.............)))))).....................-(((((((....)))))))....)))..--.)).))))))) ( -21.62)
>DroSec_CAF1 34719 114 - 1
-----GAUCCCAGGAUGGCAGUAAAAUUAUGGCGAUUUUAAAAAAUACCAGGAAAGCCAUAAAUAAAAUAUUAAUUACA-ACAAAUAGAAUAAUUUGUAGUAACAGAACAGUCUUGCUGU
-----.(((....))).(((((((..(((((((..((((..........))))..)))))))............((((.-((((((......)))))).))))..........))))))) ( -22.00)
>DroSim_CAF1 33895 111 - 1
-----GAUCCCAGGAUAGCAGCAAAAUUAUGGCGGC-UUAAAAAAUAUCGGGUAAGCCAUAAAUAAAAUAUUAAUUACA-ACCAAUAGAAUAAGUUGUAUUAUCAAA--AAUCUUGCUGU
-----.(((....))).(((((((..(((((((.((-(..(......)..)))..))))))).............((((-((...........))))))........--....))))))) ( -23.70)
>DroEre_CAF1 35047 111 - 1
CUGCUUAUCCCUGCAUUGCGGCAA-AUUAUGGCCGCUUAA------AUCGGGCGAGCCAUAAUUCAAAUACUUAUCAAAUGCAAAUAGAACAAUUUGUAAUAUGACA--UAUCUUGCUGU
.(((........)))..(((((((-(((((((((((((..------...))))).)))))))))..........(((..(((((((......)))))))...)))..--.....)))))) ( -30.50)
>consensus
_____GAUCCCAGGAUUGCAGCAAAAUUAUGGCGGCUUAAAAAAAUAUCGGGUAAGCCAUAAAUAAAAUAUUAAUUACA_ACAAAUAGAAUAAUUUGUAAUAUCAGA__AAUCUUGCUGU
.................(((((((..(((((((......................)))))))..................((((((......))))))...............))))))) (-15.54 = -15.72 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:22 2006