Locus 5771

Sequence ID 3R_DroMel_CAF1
Location 15,031,122 – 15,031,220
Length 98
Max. P 0.760668
window9456

overview

Window 6

Location 15,031,122 – 15,031,220
Length 98
Sequences 3
Columns 104
Reading direction forward
Mean pairwise identity 74.92
Mean single sequence MFE -23.37
Consensus MFE -15.26
Energy contribution -15.27
Covariance contribution 0.00
Combinations/Pair 1.09
Mean z-score -1.52
Structure conservation index 0.65
SVM decision value 0.50
SVM RNA-class probability 0.760668
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15031122 98 + 27905053
AUAGUAGUUAAGAGACACUAGCAUGCCCAUU----UGGGUGAUUCGUGCUUGUGGAUUG--CACUACUAGGGAGAACUGUUUCGCUAACAGCCAUCUUCUUCAA
.(((((((...((..(((.(((((((((...----.)))).....))))).)))..)).--.)))))))((((((.(((((.....)))))...)))))).... ( -32.50)
>DroSec_CAF1 34000 103 + 1
AUAGUAGUUAAGAGACUCUAGCAUGCCUAUUCAGCUAGGUGAUUCA-GCUUGUGGAUUGUGCACUACUAGUCAAAACUGUUUUACUAACAGCUAUCAUUUUAAA
.(((((((..((.....)).(((((((((......)))))((((((-.....))))))))))))))))).......(((((.....)))))............. ( -21.00)
>DroSim_CAF1 33167 85 + 1
AUAGUAGUUAA--------------CCUAUU----UAGGUGAUUCA-GCUUGUGGAUUGCACACUACUACUGAGAAGUGUUUCACUAACAGCCACUUUUUUCAA
.(((((((..(--------------(((...----.))))((((((-.....))))))....)))))))..((((((((.............)))))))).... ( -16.62)
>consensus
AUAGUAGUUAAGAGAC_CUAGCAUGCCUAUU____UAGGUGAUUCA_GCUUGUGGAUUG__CACUACUAGUGAGAACUGUUUCACUAACAGCCAUCUUUUUCAA
.(((((((................(((((......)))))((((((......))))))....))))))).......(((((.....)))))............. (-15.26 = -15.27 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:21 2006