Locus 5770

Sequence ID 3R_DroMel_CAF1
Location 15,016,056 – 15,016,151
Length 95
Max. P 0.997427
window9454 window9455

overview

Window 4

Location 15,016,056 – 15,016,151
Length 95
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 94.74
Mean single sequence MFE -32.05
Consensus MFE -26.80
Energy contribution -26.96
Covariance contribution 0.16
Combinations/Pair 1.04
Mean z-score -2.76
Structure conservation index 0.84
SVM decision value 2.86
SVM RNA-class probability 0.997427
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15016056 95 + 27905053
GCCCAACGUUGGCCGAAUACGCUGCAGGAACUGGAGCAGCAGCAACAAAAACACGAGCAAAGCAUGAGACUCCAGCCUGUGGCAAACAAUUUGGA
..(((....)))((((((..((..((((..((((((...((((..................)).))...))))))))))..)).....)))))). ( -27.47)
>DroSec_CAF1 23206 95 + 1
GCCCAACGUUGGCCGAAUACGCUGCAGGAACUGGAGCAGCAGCAACAAAAACACGAGCAAAGCAUGAGGCUCCAGCCUGUGGCAAACAAUUUGGA
..(((....)))((((((..((..((((..(((((((..((((..................)).))..)))))))))))..)).....)))))). ( -32.47)
>DroSim_CAF1 22376 95 + 1
GCCCAACGUUGGCCGAAUACGCUGCAGGAACUGGAGCGGCAGCAACAAAAACACGAGCAAAGCAUGAGGCUCCAGCCUGUGGCAAACAAUUUGGA
..(((....)))((((((..((..((((..(((((((..((((..................)).))..)))))))))))..)).....)))))). ( -31.97)
>DroEre_CAF1 23426 95 + 1
GCCCAGCGUUGGCCAAAUACGCUGCAGGAACUGGAGCAGCAGCAACAAGAACACGAGCAAAAGCUGAGGCUCCAGCCUGUGGCAAACAAUUUGGA
..((......))((((((..((..((((..(((((((..((((...................))))..)))))))))))..)).....)))))). ( -36.11)
>DroYak_CAF1 29631 95 + 1
GCCCAGCGUUGGCCAAAUACGCUGCAGGAACUGGAGAAGCAGCAACAAAAACACGAGCAAAAGCUGAGGCUCCAGCCUGUGGCAAGCAAUUUGGA
..((......))((((((..((..((((..((((((...((((...................))))...))))))))))..)).....)))))). ( -32.21)
>consensus
GCCCAACGUUGGCCGAAUACGCUGCAGGAACUGGAGCAGCAGCAACAAAAACACGAGCAAAGCAUGAGGCUCCAGCCUGUGGCAAACAAUUUGGA
..(((....)))((((((..((..((((..(((((((..((.......................))..)))))))))))..)).....)))))). (-26.80 = -26.96 +   0.16)

alignment

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secondary structure

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dotplot

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Window 5

Location 15,016,056 – 15,016,151
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 94.74
Mean single sequence MFE -30.12
Consensus MFE -25.86
Energy contribution -25.86
Covariance contribution -0.00
Combinations/Pair 1.12
Mean z-score -1.35
Structure conservation index 0.86
SVM decision value 0.34
SVM RNA-class probability 0.695672
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15016056 95 - 27905053
UCCAAAUUGUUUGCCACAGGCUGGAGUCUCAUGCUUUGCUCGUGUUUUUGUUGCUGCUGCUCCAGUUCCUGCAGCGUAUUCGGCCAACGUUGGGC
(((((...(((.(((.(((((((((((..((.((...((..........)).))))..)))))))..))))....(....)))).))).))))). ( -27.80)
>DroSec_CAF1 23206 95 - 1
UCCAAAUUGUUUGCCACAGGCUGGAGCCUCAUGCUUUGCUCGUGUUUUUGUUGCUGCUGCUCCAGUUCCUGCAGCGUAUUCGGCCAACGUUGGGC
(((((...(((.(((.(((((((((((..((.((...((..........)).))))..)))))))..))))....(....)))).))).))))). ( -29.10)
>DroSim_CAF1 22376 95 - 1
UCCAAAUUGUUUGCCACAGGCUGGAGCCUCAUGCUUUGCUCGUGUUUUUGUUGCUGCCGCUCCAGUUCCUGCAGCGUAUUCGGCCAACGUUGGGC
(((((...(((.(((.(((((((((((..((.((...((..........)).))))..)))))))..))))....(....)))).))).))))). ( -28.90)
>DroEre_CAF1 23426 95 - 1
UCCAAAUUGUUUGCCACAGGCUGGAGCCUCAGCUUUUGCUCGUGUUCUUGUUGCUGCUGCUCCAGUUCCUGCAGCGUAUUUGGCCAACGCUGGGC
............(((.(((((((((((..((((..(.((....))....)..))))..)))))))..))))((((((.........))))))))) ( -34.50)
>DroYak_CAF1 29631 95 - 1
UCCAAAUUGCUUGCCACAGGCUGGAGCCUCAGCUUUUGCUCGUGUUUUUGUUGCUGCUUCUCCAGUUCCUGCAGCGUAUUUGGCCAACGCUGGGC
............(((.((((((((((...((((..(.((....))....)..))))...))))))..))))((((((.........))))))))) ( -30.30)
>consensus
UCCAAAUUGUUUGCCACAGGCUGGAGCCUCAUGCUUUGCUCGUGUUUUUGUUGCUGCUGCUCCAGUUCCUGCAGCGUAUUCGGCCAACGUUGGGC
............(((.(((((((((((..((.((...((..........)).))))..)))))))..))))((((((.........))))))))) (-25.86 = -25.86 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:20 2006