| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,013,459 – 15,013,554 |
| Length | 95 |
| Max. P | 0.739659 |
| Location | 15,013,459 – 15,013,554 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 62.64 |
| Mean single sequence MFE | -21.77 |
| Consensus MFE | -6.70 |
| Energy contribution | -6.22 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.31 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.739659 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15013459 95 - 27905053 AGUGUCCAA--AAGUAUGCU----------------------AUGGC-CUCAUUUGUUCUGAUUUUCGUUGCAUACUUUUAUGCACCAUUUUAAAUUAUUUUCGCAUAGUUUCAAUUUGU .((((..((--((((((((.----------------------((((.-.(((.......)))...)))).))))))))))..))))((..(((((((((......))))))).))..)). ( -20.30) >DroSec_CAF1 20774 85 - 1 AAUGUCUAA--AAGUAUGCU----------------------AUGGA-CUCGUGUGCUCUGAUUUUCAUUGCAUACUUUUAUGCACCAUUAUAAGUUAUUU----------UCAAUUUGU ..(((.(((--((((((((.----------------------(((((-.(((.......)))..))))).))))))))))).))).....(((((((....----------..))))))) ( -19.60) >DroSim_CAF1 19823 85 - 1 AAAGUCAAA--AAGUAUGCU----------------------AUGGA-AUAAUUUGCUCUGAUUUUCAUUGCAUACUUUUAUGCACCAUUAUAAGUUAUUU----------UCAAUUUGU ...((..((--((((((((.----------------------(((((-(..............)))))).))))))))))..))......(((((((....----------..))))))) ( -17.04) >DroEre_CAF1 20850 116 - 1 GCUGUUCAA--AAGUAUGCAACCAUUUAUCUGUGAGAAUUUCAUUGA-UUCAUUUGUUCUGAUUU-AGUUGCGUACUUUUGUACACCAUUUUAAGGGGUUUUCCCAUCGUUUCACGUGGC ..(((.(((--((((((((((((((......))).(((((.....))-)))..............-.)))))))))))))).)))(((.......(((....)))..((.....))))). ( -30.20) >DroYak_CAF1 27040 113 - 1 ----UUCAAGAAGGUGUGCAAUGG--UAUUUUUGGGAAUUCCUUUGGUUUCAUUUGUUCUGAUUUCCGUAGCAUACUUUUACACAUCAUUAUAAGCUA-UUUCCCAUAGUUUUACGUAUU ----.....((((((((((.((((--......(.(((((.....((....))...))))).)...)))).))))))))))............((((((-(.....)))))))........ ( -21.70) >consensus AAUGUCCAA__AAGUAUGCU______________________AUGGA_CUCAUUUGUUCUGAUUUUCGUUGCAUACUUUUAUGCACCAUUAUAAGUUAUUUUC_CAU_GUUUCAAUUUGU ...........((((((((...................................................)))))))).......................................... ( -6.70 = -6.22 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:18 2006