Locus 5768

Sequence ID 3R_DroMel_CAF1
Location 15,010,773 – 15,010,871
Length 98
Max. P 0.506266
window9452

overview

Window 2

Location 15,010,773 – 15,010,871
Length 98
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 82.92
Mean single sequence MFE -19.97
Consensus MFE -13.72
Energy contribution -13.83
Covariance contribution 0.12
Combinations/Pair 1.26
Mean z-score -1.55
Structure conservation index 0.69
SVM decision value -0.05
SVM RNA-class probability 0.506266
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15010773 98 - 27905053
-GGAGAGGGGCAGGAAACUGGCAAAUAAGUUGAUUUGUUUGUUGUUUGUAGAGAAUGAAAAUGCCAAA-----AAAGCGCACUGCCAAUGCAAAUACCCAGUGG
-.....(((.(((....)))(((((((((....)))))))))((((((((.....((..(.((((...-----...).))).)..)).)))))))))))..... ( -22.20)
>DroPse_CAF1 19283 98 - 1
-AAAAGCGAGCAGGAAACAGACAAAUAAGUUGAUUUGUUUGUUGUUUGUAGAGAAUGAAAAUGCCGAA-----AAAGCGCACAGCAAAUGCAAAUACCCACGAG
-....((((((((.((((((((((.....))).))))))).))))))))............((((...-----...).)))..((....))............. ( -19.60)
>DroWil_CAF1 36450 98 - 1
---AGAAACAC---AGACGAACAAAUAAGUUGAUUUGUUUGUUGUUUGUUAAGAAUGAAAAUGCCAAAAACUAAAAGAGCACUAAAAAUGCAAAUGACCAAAGA
---...((((.---.(((((((((((......)))))))))))...))))............................(((.......)))............. ( -14.20)
>DroYak_CAF1 21623 97 - 1
-GGAAAGGGGCUGGA-ACAAGCAAAUAAGUUGAUUUGUUUGUUGUUUGUAGAGAAUGAAAAUGCCGAA-----AAAGCGCACUGCCAAUGCAAAUACCCACUGG
-.....(((.....(-((((((((((......)))))))))))(((((((.....((..(.((((...-----...).))).)..)).))))))).)))..... ( -22.00)
>DroAna_CAF1 23050 99 - 1
GGAAAAAGAACAGGAAACAGACAAAUAAGUUGAUUUGUUUGUUGUUUGUAGAGAAUGAAAAUGCCGAA-----AAAGCGCACUGCAAAUGCAAAUAUCCACCAG
............((((((((((((((......)))))))))))((((((((...((....))(((...-----...).)).)))))))).......)))..... ( -22.20)
>DroPer_CAF1 19188 97 - 1
--AAAGCGAGCAGGAAACAGACAAAUAAGUUGAUUUGUUUGUUGUUUGUAGAGAAUGAAAAUGCCGAA-----AAAGCGCACAGCAAAUGCAAAUACCCACGAG
--...((((((((.((((((((((.....))).))))))).))))))))............((((...-----...).)))..((....))............. ( -19.60)
>consensus
_GAAAAAGAGCAGGAAACAGACAAAUAAGUUGAUUUGUUUGUUGUUUGUAGAGAAUGAAAAUGCCGAA_____AAAGCGCACUGCAAAUGCAAAUACCCACGAG
.........(((((.(((((((((((......))))))))))).))))).............................(((.......)))............. (-13.72 = -13.83 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:17 2006