Locus 5767

Sequence ID 3R_DroMel_CAF1
Location 15,007,970 – 15,008,085
Length 115
Max. P 0.526538
window9451

overview

Window 1

Location 15,007,970 – 15,008,085
Length 115
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 88.51
Mean single sequence MFE -22.61
Consensus MFE -16.14
Energy contribution -17.46
Covariance contribution 1.32
Combinations/Pair 1.12
Mean z-score -1.69
Structure conservation index 0.71
SVM decision value -0.01
SVM RNA-class probability 0.526538
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15007970 115 - 27905053
AAUUUGCAGGCUGGAACAAACAGCUUUAAGCCUAAUUAAAUAUUCUCAGUAAAUUGCUUUUAAUAAUUGAUUACCUUUUAGGAUAAGCGGGGUAAUUAAAAGAAGCUCAAUAAAU
(((((((.(((((.......)))))((((......)))).........)))))))((((((.....(((((((((((...........))))))))))).))))))......... ( -22.40)
>DroSec_CAF1 15433 115 - 1
AAUUUGCAGGCUGGAGCAAACUGCUUUAAGCCUAAUUAAAUAUUCCCAGUAAAUUGCUUUUAAUAAUUGAUUACCUUUUAGGAUAAACUGGGUAAUUAAAAGAAGCUCAAUAAAU
(((((((((((((((((.....))))).)))))(((.....)))....)))))))((((((.....((((((((((...((......)))))))))))).))))))......... ( -27.00)
>DroSim_CAF1 14291 115 - 1
AAUUUGCAGGCUGUAGCAAACUGCUUAAAGCCUAAUUAAAUAUUCCCAGUAAAUUGCUUUUAAUAAUUGAUUACCUUUUAGGAUAAACUGGGUAAUUAAAAGAAGCUCAAUAAAU
((((((((((((..(((.....)))...)))))(((.....)))....)))))))((((((.....((((((((((...((......)))))))))))).))))))......... ( -26.10)
>DroEre_CAF1 15496 114 - 1
AAUUUA-AGGCUGGCGCAAACGGUUUCAAGCUUAAUUUAAUAUUCUUAGCAAAUUGCUUUUAAUAAUGGAUUACCUUGUAGGAUAAACAGGCUAAUUAAAAGAAGCUCAAUAAAU
......-((((((.......))))))..(((((.......((((...(((.....)))...))))...(((((.(((((.......))))).))))).....)))))........ ( -16.50)
>DroYak_CAF1 18858 111 - 1
AAUUUA-AGGCAGGAGCAAACUGCUUUAAGCUUAAU---AUAUAUCCAGUAACUUGCUUUUAAUAAUUGAUUACAAUUUAGGAUAAACUCGGUAAUUAAAAGAAGCUCGAUAAAU
..((((-((((((.......))))))))))......---...((((.(((......((((((((.(((((..................))))).))))))))..))).))))... ( -21.07)
>consensus
AAUUUGCAGGCUGGAGCAAACUGCUUUAAGCCUAAUUAAAUAUUCCCAGUAAAUUGCUUUUAAUAAUUGAUUACCUUUUAGGAUAAACUGGGUAAUUAAAAGAAGCUCAAUAAAU
.......((((((((((.....))))).)))))......................((((((.....((((((((((.............)))))))))).))))))......... (-16.14 = -17.46 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:16 2006