Locus 5766

Sequence ID 3R_DroMel_CAF1
Location 15,000,077 – 15,000,173
Length 96
Max. P 0.564669
window9450

overview

Window 0

Location 15,000,077 – 15,000,173
Length 96
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 81.81
Mean single sequence MFE -16.70
Consensus MFE -9.65
Energy contribution -9.13
Covariance contribution -0.52
Combinations/Pair 1.43
Mean z-score -2.06
Structure conservation index 0.58
SVM decision value 0.06
SVM RNA-class probability 0.564669
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15000077 96 - 27905053
UAAUUAAAUAAAUGUUACUGCGUCAUUUUAGGGUAAA------AUCCUGUUUCCAAUUUAAUGUCUUUCAAUUGCGCAGUUAAUUU--UUGUUUUUUGUCUUUU
.....(((((((.(((((((((......((((((...------))))))....(((((.((.....)).)))))))))).)))).)--)))))).......... ( -16.10)
>DroSec_CAF1 7531 96 - 1
UAAUUAAAUAAAUGUUACUGCGUCAUUUUAGGGCAAA------AUCCUGUUUCCAAUUUAAUGUCUUUCAAUUGCGCAGUUAAUUU--UUGUUUUUUGUCUUUU
.....(((((((.((((((((((.(((..((((((..------....((....))......))))))..))).)))))).)))).)--)))))).......... ( -19.20)
>DroSim_CAF1 6294 96 - 1
UAAUUAAAUAAAUGUUACUGCGUCAUUUUGGGGUAAA------AUCCUGUUUCCAAUUUAAUGUCUUUCAAUUGCGCAGUUAAUUU--UUGUUUUUUGUCUUUU
.....(((((((.((((((((((((((((((((....------.......))))))...))))..........)))))).)))).)--)))))).......... ( -15.90)
>DroEre_CAF1 7458 88 - 1
UAAUUAAAUAUUUGUUACUGCGCCAUUUUAGGGUAAA------AUCCUGUUC-ACAUUUUAU-UUCUUCAAUUGCGCAGUUCAUU--------UUUUGUCUUUU
....((((....((..(((((((.(((..((((((((------((.......-..)))))).-))))..))).))))))).))..--------.))))...... ( -15.60)
>DroYak_CAF1 9266 97 - 1
UAAUUAAAUAAAUGUUACUGCGCCAUUUUAGGGUAAG------AUCCUGUUCCCCAUUUUAU-UCCUUCAAUUGCGCAAUUCAUUUCUUUUUUUUUUGUCUUUU
.((..(((.(((((....(((((.(((..((((((((------((..........)))))).-))))..))).)))))...))))).)))..)).......... ( -15.90)
>DroAna_CAF1 10113 102 - 1
AAAUUAAAUUUUUGUUAGUGCGUAAUUUUAUGGUGAGAGGCAAUUCCGGUUCACGACUUCUUUCUUUUCAAUUACGCAGUUAAUUU--UUAUUUUUUAUCUUUU
.....((((....((((((((((((((....((.((((((......((.....)).)))))).))....))))))))).)))))..--..)))).......... ( -17.50)
>consensus
UAAUUAAAUAAAUGUUACUGCGUCAUUUUAGGGUAAA______AUCCUGUUCCCAAUUUAAUGUCUUUCAAUUGCGCAGUUAAUUU__UUGUUUUUUGUCUUUU
................(((((((.(((..((((..............................))))..))).)))))))........................ ( -9.65 =  -9.13 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:15 2006