| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,991,797 – 14,992,019 |
| Length | 222 |
| Max. P | 0.999945 |
| Location | 14,991,797 – 14,991,899 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 85.81 |
| Mean single sequence MFE | -23.70 |
| Consensus MFE | -16.63 |
| Energy contribution | -16.82 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.70 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.529397 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14991797 102 + 27905053 GCGGUCAAUUUCCCGUGUUUCUGGAUCUGUUGUUACACGGUUGCGAUUAC------GAUUCCGGCUUCUGUUUUAUAUUGCUCGCCACUUUCGCUUAUUUCAU-----AUUAC ((((........((((((..(..........)..))))))..((((...(------(((...(((....)))....)))).)))).....)))).........-----..... ( -17.90) >DroSec_CAF1 11202 96 + 1 GCGGGCAAUAUUCCGUGUUUCUGGAUCUGUUGUUACAC------GAUUAC------GAGUCCGGCUUCUGUUUUAUGUUGCUCGCCACUUUCGCUUAUUUCAU-----AUUGC (((((((((((.........(((((..(((.(((....------))).))------)..)))))..........)))))))))))..................-----..... ( -24.71) >DroSim_CAF1 10880 96 + 1 GCGGGCAAUAUUCCGUGUUUCUGGAUCUGUUGUUACAC------GAUUAC------GAUUCCGGCUUCUGUUUUAUGUUGCUCGCCACUUUCGCUUAUUUCAU-----AUUGC (((((((((((.........(((((..(((.(((....------))).))------)..)))))..........)))))))))))..................-----..... ( -23.41) >DroEre_CAF1 10930 107 + 1 GCGGCCGAUUUACCGUGUUUCUGGAUCUGUAGUUACAC------GAUUACGACUACGAUUCCGGCUUCUGUUUUCUGUUGGCCGCCACUUUCGCUUAUUUCAUUUUCAAUUGC (((((((((...........(((((..(((((((....------......)))))))..)))))............)))))))))............................ ( -28.80) >consensus GCGGGCAAUAUUCCGUGUUUCUGGAUCUGUUGUUACAC______GAUUAC______GAUUCCGGCUUCUGUUUUAUGUUGCUCGCCACUUUCGCUUAUUUCAU_____AUUGC (((((((((((.........(((((..................................)))))..........)))))))))))............................ (-16.63 = -16.82 + 0.19)
| Location | 14,991,837 – 14,991,939 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 87.99 |
| Mean single sequence MFE | -23.41 |
| Consensus MFE | -17.20 |
| Energy contribution | -17.70 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.796221 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14991837 102 - 27905053 CGGGGCGACAAGCAAACAAUUGUUUGCCGAACAAACAAUUGUAAU-----AUGAAAUAAGCGAAAGUGGCGAGCAAUAUAAAACAGAAGCCGGAAUC------GUAAUCGCAA ....((((.......(((((((((((.....)))))))))))..(-----((((.....((....))(((..................)))....))------))).)))).. ( -26.17) >DroSec_CAF1 11240 98 - 1 CGGGGCGACAAGCAAACAAUUGUUUGCCGAACAAACAUUUGCAAU-----AUGAAAUAAGCGAAAGUGGCGAGCAACAUAAAACAGAAGCCGGACUC------GUAAUC---- (((.((.....))......(((((((((.......(((.......-----)))......((....))))))))))).............))).....------......---- ( -20.80) >DroSim_CAF1 10918 98 - 1 CGGGGCGACAAGCAAACAAUUGUUUGCCGAACAAACAUUUGCAAU-----AUGAAAUAAGCGAAAGUGGCGAGCAACAUAAAACAGAAGCCGGAAUC------GUAAUC---- (((.((.....))......(((((((((.......(((.......-----)))......((....))))))))))).............))).....------......---- ( -20.80) >DroEre_CAF1 10968 109 - 1 CGGGGAGACCAGCAAACAAUUGUUUGCCAAACAAACAAUUGCAAUUGAAAAUGAAAUAAGCGAAAGUGGCGGCCAACAGAAAACAGAAGCCGGAAUCGUAGUCGUAAUC---- ..((....)).((...((((((((((.....)))))))))).....((..((((.....((....))..((((...............))))...))))..))))....---- ( -25.86) >consensus CGGGGCGACAAGCAAACAAUUGUUUGCCGAACAAACAAUUGCAAU_____AUGAAAUAAGCGAAAGUGGCGAGCAACAUAAAACAGAAGCCGGAAUC______GUAAUC____ ((((....)..((...((((((((((.....))))))))))..................((....)).))...................)))..................... (-17.20 = -17.70 + 0.50)
| Location | 14,991,864 – 14,991,979 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.85 |
| Mean single sequence MFE | -35.78 |
| Consensus MFE | -33.54 |
| Energy contribution | -33.62 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.67 |
| Structure conservation index | 0.94 |
| SVM decision value | 4.74 |
| SVM RNA-class probability | 0.999945 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14991864 115 + 27905053 UAUAUUGCUCGCCACUUUCGCUUAUUUCAU-----AUUACAAUUGUUUGUUCGGCAAACAAUUGUUUGCUUGUCGCCCCGUCUCGCUCUAAAUGUGCGCAACAAGCGAGUGGCGCGUCCU ......((.((((((..((((((....((.-----...(((((((((((.....))))))))))).....)).......((..(((.(.....).)))..)))))))))))))).))... ( -36.60) >DroSec_CAF1 11263 115 + 1 UAUGUUGCUCGCCACUUUCGCUUAUUUCAU-----AUUGCAAAUGUUUGUUCGGCAAACAAUUGUUUGCUUGUCGCCCCGUCUCGCUCUAAAUGUGCGCAACAAGCGAGUGGCGCGUCCU ......((.((((((..((((((.......-----...((((((..(((((.....)))))..))))))..........((..(((.(.....).)))..)))))))))))))).))... ( -33.40) >DroSim_CAF1 10941 115 + 1 UAUGUUGCUCGCCACUUUCGCUUAUUUCAU-----AUUGCAAAUGUUUGUUCGGCAAACAAUUGUUUGCUUGUCGCCCCGUCUCGCUCUAAAUGUGCGCAACAAGCGAGUGGCGCGUCCU ......((.((((((..((((((.......-----...((((((..(((((.....)))))..))))))..........((..(((.(.....).)))..)))))))))))))).))... ( -33.40) >DroEre_CAF1 10997 120 + 1 UCUGUUGGCCGCCACUUUCGCUUAUUUCAUUUUCAAUUGCAAUUGUUUGUUUGGCAAACAAUUGUUUGCUGGUCUCCCCGUCUCGCUCUAAAUGUGCGCAACAAGCGAGUGGCGCGUCCU ......(((((((((..((((((...............(((((((((((.....)))))))))))((((.((.....)).....((.(.....).)))))).)))))))))))).))).. ( -39.60) >DroYak_CAF1 11373 115 + 1 UCUGUUGGCCGUCACUUUCGCUUAUUUCAU-----AUUGCAAUUGUUUGUUCGGCAAACAAUUGUUUGCUUGUCGCCCUGUCUCGCUCUAAAUGUGCGCAACAAGCGAGUGGCGCGUCCU ......(((((((((((.............-----...(((((((((((.....)))))))))))..((((((.((........((.(.....).)))).)))))))))))))).))).. ( -35.90) >consensus UAUGUUGCUCGCCACUUUCGCUUAUUUCAU_____AUUGCAAUUGUUUGUUCGGCAAACAAUUGUUUGCUUGUCGCCCCGUCUCGCUCUAAAUGUGCGCAACAAGCGAGUGGCGCGUCCU .........((((((..((((((...............(((((((((((.....)))))))))))..............((..(((.(.....).)))..))))))))))))))...... (-33.54 = -33.62 + 0.08)
| Location | 14,991,864 – 14,991,979 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 93.85 |
| Mean single sequence MFE | -36.93 |
| Consensus MFE | -32.60 |
| Energy contribution | -33.60 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.05 |
| Structure conservation index | 0.88 |
| SVM decision value | 4.25 |
| SVM RNA-class probability | 0.999849 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14991864 115 - 27905053 AGGACGCGCCACUCGCUUGUUGCGCACAUUUAGAGCGAGACGGGGCGACAAGCAAACAAUUGUUUGCCGAACAAACAAUUGUAAU-----AUGAAAUAAGCGAAAGUGGCGAGCAAUAUA ..(...(((((((.(((((((((.(.(.(((......))).)).)))))))))..(((((((((((.....)))))))))))...-----..............)))))))..)...... ( -39.80) >DroSec_CAF1 11263 115 - 1 AGGACGCGCCACUCGCUUGUUGCGCACAUUUAGAGCGAGACGGGGCGACAAGCAAACAAUUGUUUGCCGAACAAACAUUUGCAAU-----AUGAAAUAAGCGAAAGUGGCGAGCAACAUA ..(...(((((((.(((((((((.(.(.(((......))).)).)))))))))...(((.((((((.....)))))).)))....-----..............)))))))..)...... ( -34.80) >DroSim_CAF1 10941 115 - 1 AGGACGCGCCACUCGCUUGUUGCGCACAUUUAGAGCGAGACGGGGCGACAAGCAAACAAUUGUUUGCCGAACAAACAUUUGCAAU-----AUGAAAUAAGCGAAAGUGGCGAGCAACAUA ..(...(((((((.(((((((((.(.(.(((......))).)).)))))))))...(((.((((((.....)))))).)))....-----..............)))))))..)...... ( -34.80) >DroEre_CAF1 10997 120 - 1 AGGACGCGCCACUCGCUUGUUGCGCACAUUUAGAGCGAGACGGGGAGACCAGCAAACAAUUGUUUGCCAAACAAACAAUUGCAAUUGAAAAUGAAAUAAGCGAAAGUGGCGGCCAACAGA .((.(.(((((((((((((((...((..(((((.((......((....)).))...((((((((((.....))))))))))...)))))..)).)))))))))..)))))))))...... ( -42.60) >DroYak_CAF1 11373 115 - 1 AGGACGCGCCACUCGCUUGUUGCGCACAUUUAGAGCGAGACAGGGCGACAAGCAAACAAUUGUUUGCCGAACAAACAAUUGCAAU-----AUGAAAUAAGCGAAAGUGACGGCCAACAGA .....(.(((..(((((((((((.(.................).)))))))))...((((((((((.....))))))))))....-----..)).....((....))...))))...... ( -32.63) >consensus AGGACGCGCCACUCGCUUGUUGCGCACAUUUAGAGCGAGACGGGGCGACAAGCAAACAAUUGUUUGCCGAACAAACAAUUGCAAU_____AUGAAAUAAGCGAAAGUGGCGAGCAACAUA ......(((((((.(((((((((.(...(((......)))..).)))))))))...((((((((((.....)))))))))).......................)))))))......... (-32.60 = -33.60 + 1.00)
| Location | 14,991,899 – 14,992,019 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.50 |
| Mean single sequence MFE | -28.37 |
| Consensus MFE | -25.46 |
| Energy contribution | -25.50 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.562729 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14991899 120 + 27905053 AAUUGUUUGUUCGGCAAACAAUUGUUUGCUUGUCGCCCCGUCUCGCUCUAAAUGUGCGCAACAAGCGAGUGGCGCGUCCUUUUAUUUUCUGCAUUACAUGGCCGCCCUCCCCCUCCCCAU (((((((((.....)))))))))....((((((.(((.(((..........))).).)).))))))(((.((((.(.((....................))))))))))........... ( -29.45) >DroSec_CAF1 11298 120 + 1 AAAUGUUUGUUCGGCAAACAAUUGUUUGCUUGUCGCCCCGUCUCGCUCUAAAUGUGCGCAACAAGCGAGUGGCGCGUCCUUUUAUUUUCUGCAUUACAUUGCCACCCUCCUCCUCUCGUU .(((((.(((..(((((((....))))))).(.(((.(((.((((((.....(((.....)))))))))))).))).)............)))..))))).................... ( -29.30) >DroSim_CAF1 10976 120 + 1 AAAUGUUUGUUCGGCAAACAAUUGUUUGCUUGUCGCCCCGUCUCGCUCUAAAUGUGCGCAACAAGCGAGUGGCGCGUCCUUUUAUUUUCUGCAUUACAUUGCCACCCUCCCCCUCUCGUU .(((((.(((..(((((((....))))))).(.(((.(((.((((((.....(((.....)))))))))))).))).)............)))..))))).................... ( -29.30) >DroEre_CAF1 11037 110 + 1 AAUUGUUUGUUUGGCAAACAAUUGUUUGCUGGUCUCCCCGUCUCGCUCUAAAUGUGCGCAACAAGCGAGUGGCGCGUCCUUUUAUUUUCUGCAUUACAUUGCCCC----------UCAUC ............(((((((....)))))))((.(.(.(((.((((((.....(((.....)))))))))))).).).))...........(((......)))...----------..... ( -25.80) >DroYak_CAF1 11408 120 + 1 AAUUGUUUGUUCGGCAAACAAUUGUUUGCUUGUCGCCCUGUCUCGCUCUAAAUGUGCGCAACAAGCGAGUGGCGCGUCCUUUUAUUUUCUGCAUUACAUUGCCGCCCUCCCCCUUUCAUC (((((((((.....)))))))))....((((((.((........((.(.....).)))).))))))(((.((((................(((......))))))))))........... ( -27.99) >consensus AAUUGUUUGUUCGGCAAACAAUUGUUUGCUUGUCGCCCCGUCUCGCUCUAAAUGUGCGCAACAAGCGAGUGGCGCGUCCUUUUAUUUUCUGCAUUACAUUGCCACCCUCCCCCUCUCAUU ...(((.(((..(((((((....))))))).(.(((.(((.((((((.....(((.....)))))))))))).))).)............)))..)))...................... (-25.46 = -25.50 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:08 2006