Locus 5759

Sequence ID 3R_DroMel_CAF1
Location 14,990,087 – 14,990,202
Length 115
Max. P 0.967147
window9437

overview

Window 7

Location 14,990,087 – 14,990,202
Length 115
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.92
Mean single sequence MFE -25.52
Consensus MFE -21.18
Energy contribution -21.46
Covariance contribution 0.28
Combinations/Pair 1.07
Mean z-score -1.98
Structure conservation index 0.83
SVM decision value 1.61
SVM RNA-class probability 0.967147
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14990087 115 + 27905053
CGCAACGUGUUCGUUGUAAAUGCAAUUAAUCGUUGUUGGUCGCUGAAAAAACUAAUAUUUCGGGAGUCCGAUACAAGAAGGGCAAAAAAGCACAAGUGCAGAAAAAGCAAAA-----AAA
.((((((....))))))...(((......((..((((((.(.((((((.........))))))..).))))))...))...........(((....))).......)))...-----... ( -24.20)
>DroSec_CAF1 9438 120 + 1
CGCAACGUGCUCGUUGUAAUUGCAAUUAAUCGUUGUUGGCCGCCGAAAAAAGUAAAAUUUCGGGAGUCCGAUACAAGAAGGGCAAAAAAGCACAAGUGCAGAAAAAACAAAAAAAAAAAA
.((((((....))))))..((((..((......((((((.(.((((((.........))))))..).))))))....))..))))....(((....)))..................... ( -25.10)
>DroSim_CAF1 9070 117 + 1
CGCAACGUGCUCGUUGUAAUUGCAAUUAAUCGUUGUUGGCCGCCGAAAAAAGUAAAAUUUCGGGAGUCCGAUACAAGAAGGGCAAAAAAGCACAAGUGCAGAAAAAACAAAAA---AAAA
.((((((....))))))..((((..((......((((((.(.((((((.........))))))..).))))))....))..))))....(((....)))..............---.... ( -25.10)
>DroEre_CAF1 9130 116 + 1
CGCAACGUGCUCGUUGUAAUUGCAAUUAAUCGUCGUUGGCCGCCGAAAAAAGUAAAAUUUCGUGUGUCCGAGACAAAAAGGGCAAGAAGGCACAAGUGCAGAAAAAACAAAAA----AAA
.(((..(((((.(((((....))))).....(((.((((.((((((((.........))))).))).)))))))..............)))))...)))..............----... ( -26.80)
>DroYak_CAF1 9499 112 + 1
CGCAACGUGCUCGUUGUAAUUGCAAUUAAUAGUCGUUGGCCGCCGAAAAAAGUAAAAUUUCGGGUGUCCGAUACAGGAAAGGCAAAAA-GCACAAGUGCAGAAAAAACAAA-------AA
.(((..(((((.(((((....)))))............(((.((((((.........))))))...(((......)))..)))....)-))))...)))............-------.. ( -26.40)
>consensus
CGCAACGUGCUCGUUGUAAUUGCAAUUAAUCGUUGUUGGCCGCCGAAAAAAGUAAAAUUUCGGGAGUCCGAUACAAGAAGGGCAAAAAAGCACAAGUGCAGAAAAAACAAAAA____AAA
.((((((....))))))..((((..((....((.((((((..((((((.........))))))..).)))))))...))..))))....(((....)))..................... (-21.18 = -21.46 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:02 2006