Locus 5758

Sequence ID 3R_DroMel_CAF1
Location 14,989,929 – 14,990,049
Length 120
Max. P 0.680820
window9436

overview

Window 6

Location 14,989,929 – 14,990,049
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.20
Mean single sequence MFE -27.60
Consensus MFE -25.81
Energy contribution -25.89
Covariance contribution 0.08
Combinations/Pair 1.07
Mean z-score -1.15
Structure conservation index 0.94
SVM decision value 0.31
SVM RNA-class probability 0.680820
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14989929 120 - 27905053
CCGCUCUUCGGUUGUUUACGUCGCGGCAAACGCAAAAAAACACCAACAGAAGCAGCAGAACAGGAGGAGCUAGAAUAACUGUUCGUGUUCACGACCGUCGAAAAACUGACUGAAAAAAAA
..(((((((.((((........(((.....)))..........)))).)))).))).(((((.(((.((.........)).))).)))))......((((......)))).......... ( -28.07)
>DroSec_CAF1 9283 117 - 1
CCGCUCUUCGGUUGUUUACGUCGCGGCAAACGCAAA-AAACACCAACAGAAGCAGCAG-ACAGGAGGAGCUAGAAUAACUGUUCGUGUUCACGACCGUCGAAAAACUGACUGAAA-AAAA
..(((((((.((((........(((.....)))...-......)))).)))).))).(-((.(..(((((..((((....))))..)))).)..).)))................-.... ( -26.43)
>DroSim_CAF1 8915 118 - 1
CCGCUCUUCGGUUGUUUACGUCGCGGCAAACGCAAA-AAACACCAACAGAAGCAGCAGAACAGGAGGAGCUAGAAUAACUGUUCGUGUUCACGACCGUCGAAAAACUGACUGAAA-AAAA
..(((((((.((((........(((.....)))...-......)))).)))).))).(((((.(((.((.........)).))).)))))......((((......)))).....-.... ( -28.63)
>DroEre_CAF1 8990 112 - 1
------CUCGGUUGUUUACGUCGCGGCAAACGCAAA-AAACACAAACAGAAGCAGCAGAACAGGAGGAGCUAGAAUAACUGUUCGUGUUCACGACCGUCGAAAAACUGACUGAAA-AAAA
------.((((((((((...(((((((....((...-..............))....(((((.(((.((.........)).))).)))))..).))).))).)))).))))))..-.... ( -26.03)
>DroYak_CAF1 9341 118 - 1
CGGCUCUUCGGUUGUUUACGUCGCGGCAAACGCAAA-AAACACAAACAGAAGCAGCAGAAUAGGAGGAGCUAGAAUAACUGCUCGUGUUCACGACCGUCGAAAAACUGACUGAAA-AAAA
(((((((((..((((.......(((.....)))...-....))))...)))).))).(((((.(((.((.........)).))).))))).))...((((......)))).....-.... ( -28.84)
>consensus
CCGCUCUUCGGUUGUUUACGUCGCGGCAAACGCAAA_AAACACCAACAGAAGCAGCAGAACAGGAGGAGCUAGAAUAACUGUUCGUGUUCACGACCGUCGAAAAACUGACUGAAA_AAAA
......(((((((((((...(((((((....((..................))....(((((.(((.((.........)).))).)))))..).))).))).)))).)))))))...... (-25.81 = -25.89 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:01 2006