Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 14,987,305 – 14,987,407 |
Length | 102 |
Max. P | 0.528971 |
Location | 14,987,305 – 14,987,407 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 82.27 |
Mean single sequence MFE | -39.73 |
Consensus MFE | -22.60 |
Energy contribution | -22.58 |
Covariance contribution | -0.02 |
Combinations/Pair | 1.39 |
Mean z-score | -2.18 |
Structure conservation index | 0.57 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.528971 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14987305 102 - 27905053 GGCUGUCAUUGAUUCU---CCCGUGGAGCAUCAUACGCAGCAGGAGGACACCAGUGCGGAGGUCUUCCUCUGGCUGUUGGCCUACAGUGUGCUCAUGUUCACGCU .(((((...((((.((---((...)))).))))...))))).(.(((.((.((((.((((((....)))))))))).)).))).)((((((........)))))) ( -39.10) >DroSec_CAF1 6887 102 - 1 GGCUGUCAUUGAUUCU---CCCGUGGAGCAUCAUACGCAGCCGGAGGACACCAGUGCGGAGGUCUUCCUCUGGCUGCUGGCCUACAGUGUGCUCAUGUUCACGCU ((((((...((((.((---((...)))).)))).))((((((((((((.(((........)))..)))))))))))).))))...((((((........)))))) ( -45.10) >DroSim_CAF1 6475 102 - 1 GGCUGUCAUUGAUUCU---CCCGCGGAGCAUCAUACGCAGCCGGAGGACACCAGUGCGGAGGUCUUCCUCUGGCUGCUGGCCUACAGUGUGCUCAUGUUCACGCU ((((((...((((.((---((...)))).)))).))((((((((((((.(((........)))..)))))))))))).))))...((((((........)))))) ( -45.10) >DroEre_CAF1 6857 102 - 1 GGCUGCCAUUGAUCCU---CCCGUGGAGAAUUAUACUCAGGAGGAAGACACCAGCGCGGAGGUCUUCCUCUGGCUGCUGGCCUACAGUGUGCUCAUGUUCACGCU (((.........((((---((....(((.......))).))))))...((.((((.((((((....)))))))))).)))))...((((((........)))))) ( -38.20) >DroYak_CAF1 6469 102 - 1 GGCUGUCAUUGAUCCU---CCCGUGGAGCAUCAUACUCAGCAGGAGGACACUAGUGCGGAGGUCUUCCUAUGGCUGCUGGCCUACAGUGUCCUCAUGUUCACGCU .((((....((((.((---((...)))).))))....))))..(((((((((.(((...(((....)))..(((.....)))))))))))))))........... ( -37.80) >DroMoj_CAF1 5882 99 - 1 GGAAGUU---GAGCCUAAGC---CCGAGGCUGAGCAACAAUAUGUGGACAAGAGCUUAGAGGUGUUUCUCUGGCUAAUGGCAUACAGCGUGCUCAUGUUUACAUU ....(((---.(((((....---...))))).)))......(((((((((.((((.((((((....))))))((.....)).........)))).))))))))). ( -33.10) >consensus GGCUGUCAUUGAUCCU___CCCGUGGAGCAUCAUACGCAGCAGGAGGACACCAGUGCGGAGGUCUUCCUCUGGCUGCUGGCCUACAGUGUGCUCAUGUUCACGCU .(((((...((((.((..........)).))))...))))).((....((.((((.((((((....)))))))))).)).))...((((((........)))))) (-22.60 = -22.58 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:04:00 2006