Locus 5752

Sequence ID 3R_DroMel_CAF1
Location 14,976,530 – 14,976,620
Length 90
Max. P 0.537360
window9423

overview

Window 3

Location 14,976,530 – 14,976,620
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 85.52
Mean single sequence MFE -17.17
Consensus MFE -10.46
Energy contribution -10.90
Covariance contribution 0.44
Combinations/Pair 1.07
Mean z-score -2.13
Structure conservation index 0.61
SVM decision value 0.01
SVM RNA-class probability 0.537360
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14976530 90 - 27905053
AAACCCCUUUGUAUCCCCACAAGGGUAAUCCCCAAUCAGAUUACGAUUUUCCAGAUCUCCCAACUCGAUCGCUCGCUUGUCACCUUAUUU
......((((((......))))))((((((........))))))(((......((((.........))))........)))......... ( -13.34)
>DroSec_CAF1 8827 84 - 1
AAACCCCUUUGGACCGCCACAAGGGUAAUCCCCAAUCAGAUUACGAUUUUUGAGAUCUCCCAACUCGAUC------UUGUCACCUUUUUU
.....(((((((....))).))))((((((........))))))(((....((((((.........))))------)))))......... ( -16.60)
>DroSim_CAF1 8908 84 - 1
AAACCCCUUUGGAACCCCACAAGGGUAAUCCCCAAUCAGAUUACGAGUUUCGAGAUCUCCCAACUCGAUC------UUGUCACCUUUUUU
.....(((((((....))).))))((((((........))))))..((..(((((((.........))))------)))..))....... ( -19.10)
>DroEre_CAF1 8706 85 - 1
AAACCCCUCGG---CCCCACAAGGGUAAUCCCC-AUCGGAUUUCGAUUUUCGAGAUCUCCCAACUCGAUCGCUGGC-UGUCACCUUUUUG
........(((---((......(((.....)))-...((((((((.....))))))))...............)))-))........... ( -19.70)
>DroYak_CAF1 8904 87 - 1
AAACCCCUCGG---CCCCACCAGGGUAAUCCCCAAUCAGAUUACGAUUUUCGAGAUCUUCCAGCUCGAUCUCUCGCUUGUCACCUUUUUG
.....(((.((---.....)))))((((((........))))))(((...(((((...((......))..)))))...)))......... ( -17.10)
>consensus
AAACCCCUUUG_A_CCCCACAAGGGUAAUCCCCAAUCAGAUUACGAUUUUCGAGAUCUCCCAACUCGAUC_CU_GCUUGUCACCUUUUUU
....................((((((((((........)))))).....(((((.........)))))..............)))).... (-10.46 = -10.90 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:49 2006