Locus 5751

Sequence ID 3R_DroMel_CAF1
Location 14,975,304 – 14,975,399
Length 95
Max. P 0.859006
window9422

overview

Window 2

Location 14,975,304 – 14,975,399
Length 95
Sequences 4
Columns 95
Reading direction forward
Mean pairwise identity 85.61
Mean single sequence MFE -25.35
Consensus MFE -20.84
Energy contribution -20.90
Covariance contribution 0.06
Combinations/Pair 1.09
Mean z-score -1.88
Structure conservation index 0.82
SVM decision value 0.82
SVM RNA-class probability 0.859006
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14975304 95 + 27905053
CGCUGCUGCUCCUCCGAUUCCGCCUCUGAGUCGGAAUCGUCGGAAGUAUCCUGCGAUUAAAAUAAAAUACAAUUUUAGUUAGUAUAACAUGCAUA
.((.(.((((((..((((((((.(.....).))))))))..)).)))).)..))(((((((((........))))))))).((((...))))... ( -25.00)
>DroSim_CAF1 7695 95 + 1
UGCAGCUGUUCCUCCGAUUCCGCCUCUGAGUCGGAAUCGUAGGGAGUAUCCUGCAAUUCAAAUAAAAUACAAUUUUAGUUAGUAUAACAUGCUAA
(((((...(((((.((((((((.(.....).)))))))).))))).....))))).......................(((((((...))))))) ( -26.10)
>DroEre_CAF1 7542 95 + 1
CUCUGCUGCUCCUCCGAUUCCGCCUCUGAGUCGGAUUCGUAGGGAGUAUCCUGCGAGCAAAACGAAAUAAAUUUUUAGUUAGUAUAACAUGAAAA
......(((((.((((((((.......))))))))...(((((......))))))))))............((((((((((...)))).)))))) ( -24.90)
>DroYak_CAF1 7637 94 + 1
CUCUGCUGCUCCUCCGAUUCCGCCUCUGAGUCGGAUUCGUAGGGAGUAUCCUGCGAGAAAAUCGAGAUAAAAUUGCUGUUAGUAUACCAUGCA-A
...(((..(((.((((((((.......))))))))((((((((......))))))))......))).......(((.....)))......)))-. ( -25.40)
>consensus
CGCUGCUGCUCCUCCGAUUCCGCCUCUGAGUCGGAAUCGUAGGGAGUAUCCUGCGAGUAAAACAAAAUAAAAUUUUAGUUAGUAUAACAUGCAAA
...(((((....((((((((.......))))))))(((((((((....)))))))))......................)))))........... (-20.84 = -20.90 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:48 2006