| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,969,857 – 14,969,989 |
| Length | 132 |
| Max. P | 0.716410 |
| Location | 14,969,857 – 14,969,957 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 67.33 |
| Mean single sequence MFE | -26.54 |
| Consensus MFE | -11.28 |
| Energy contribution | -11.00 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.43 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.716410 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14969857 100 + 27905053 GAUUUUCUUGAGCAAAAAAAAAAGUU-----AAACGGAAAAUGCACGAGCUGAGCGGAAACAAGGCGUAGGAAAUGCCACGGCGA---UGCUCGGAAUCGGAAUCGG--------A ((((((.(((((((............-----...((.........)).((((...(....)..(((((.....))))).))))..---)))))))....))))))..--------. ( -25.00) >DroEre_CAF1 2197 90 + 1 GAAUGUCUUAAGCGAAA---AAAGCG-----AGCGGAA-AAUGCACGGGCUGAGCGGAAACAAGGCGUAGGAAAUGCCACGGCGA---UGCUCGGAAUC------GG--------A .................---....((-----((((...-..))).(((((...(((....)..(((((.....)))))...))..---.)))))...))------).--------. ( -23.90) >DroYak_CAF1 2602 90 + 1 GAAUGUCUUAAGCGAAA---AAAGCG-----AACGGGA-AAUGCACGAGCUGAGCGGAAACAAGGCGUAGGAAAUGCUACGGCGA---UGCUCGGAAUC------AG--------A (....((((..((....---...)).-----...))))-....)..((.(((((((....)..(.(((((......))))).)..---.))))))..))------..--------. ( -23.20) >DroMoj_CAF1 2504 99 + 1 GAGCGCCUCAAGCAU-----GAGGCC-----GAGCGGA-AAUGCACGAGCUAAACGGAAAUAGAGCGUUGCAAAUGCCAGUACGGAGGAGCUGAGAGGC------UGAACGACCGA ..((((((((....)-----))))).-----..))((.-..((((((..(((........)))..)).))))....))....(((.(.((((....)))------)...)..))). ( -30.00) >DroAna_CAF1 5029 93 + 1 GAGUGUCUUG-GCCAGA---ACGGCGUAUGGAAACGGA-AAUGCACGAGUUGAGCGGAAACCAGUCGUGGGAAAUGGCUCGACAA---UGGUCGGA-UC------UG--------A .((.((((.(-((((..---.((((((.((....))..-.)))).)).(((((((.(...(((....)))....).)))))))..---))))))))-))------).--------. ( -30.60) >consensus GAAUGUCUUAAGCAAAA___AAAGCG_____AAACGGA_AAUGCACGAGCUGAGCGGAAACAAGGCGUAGGAAAUGCCACGGCGA___UGCUCGGAAUC______GG________A ...........((..........))........................(((((((....)..(((((.....)))))...........))))))..................... (-11.28 = -11.00 + -0.28)
| Location | 14,969,889 – 14,969,989 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 80.13 |
| Mean single sequence MFE | -27.67 |
| Consensus MFE | -19.10 |
| Energy contribution | -19.07 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.564507 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14969889 100 + 27905053 AAAAUGCACGAGCUGAGCGGAAACAAGGCGUAGGAAAUGCCACGGCGAUGCUCGGAAUCGGAAUCGGAAUCAGAAUCAGGCUCACAUGGCUGGCGGUGGC-------- .....((.(((((...(((....)..(((((.....)))))...))...)))))..((((...((.......)).((((.(......).)))))))).))-------- ( -27.70) >DroSec_CAF1 2216 96 + 1 A-AAUGCACGAGCUGAGCGGAAACAAGGCGUAGGAAAUGCCACAACGAUGCUCGGAAUC------GGAAUCAGAAUCAGGCUCACAUGGCUGGCGGUGGCAAG----- .-..(((..((((((((((....)..(((((.....)))))........)))).((.((------.......)).)).))))).(((.(....).))))))..----- ( -30.10) >DroSim_CAF1 2265 96 + 1 A-AAUGCACGAGCUGAGCGGAAACAAGGCGUAGGAAAUGCCACGACGAUGCUCGGAAUC------GGAAUCAGAAUCAGGCUCACAUGGCUGGCGGUGGCAAG----- .-..(((..((((((((((....)..(((((.....)))))........)))).((.((------.......)).)).))))).(((.(....).))))))..----- ( -30.10) >DroEre_CAF1 2226 99 + 1 A-AAUGCACGGGCUGAGCGGAAACAAGGCGUAGGAAAUGCCACGGCGAUGCUCGGAAUC------GGAAUCGAAAUCAGGCUCACGUGGCUGUUG-UGGCAAGGGA-A .-....((((.((((...(....)..(((((.....))))).))))((.((..((..((------(....)))..))..)))).))))(((....-.)))......-. ( -27.70) >DroYak_CAF1 2631 101 + 1 A-AAUGCACGAGCUGAGCGGAAACAAGGCGUAGGAAAUGCUACGGCGAUGCUCGGAAUC------AGAAUCAGAAGCAGGCUCACAUGGCUGGCGUUGGCAAGAGAAA .-..(((.(((.(((((((....)..(.(((((......))))).)...))))))....------..........((.((((.....)))).)).))))))....... ( -30.00) >DroAna_CAF1 5062 83 + 1 A-AAUGCACGAGUUGAGCGGAAACCAGUCGUGGGAAAUGGCUCGACAAUGGUCGGA-UC------UGAAUCAAAAUCAGGCAACCAA-----------------GAAA .-.........(((((((.(...(((....)))....).)))))))..((((..(.-((------(((.......)))))).)))).-----------------.... ( -20.40) >consensus A_AAUGCACGAGCUGAGCGGAAACAAGGCGUAGGAAAUGCCACGACGAUGCUCGGAAUC______GGAAUCAGAAUCAGGCUCACAUGGCUGGCGGUGGCAAG_____ .........((((((((((....)..(((((.....)))))........)))).((.((.......)).)).......))))).....(((......)))........ (-19.10 = -19.07 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:47 2006