Locus 5749

Sequence ID 3R_DroMel_CAF1
Location 14,969,654 – 14,969,748
Length 94
Max. P 0.604643
window9419

overview

Window 9

Location 14,969,654 – 14,969,748
Length 94
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 80.27
Mean single sequence MFE -20.21
Consensus MFE -10.94
Energy contribution -11.08
Covariance contribution 0.14
Combinations/Pair 1.25
Mean z-score -2.02
Structure conservation index 0.54
SVM decision value 0.14
SVM RNA-class probability 0.604643
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14969654 94 + 27905053
-UGAUGCCAAAUAUGCGCAUAAAUUUGACUAGACACGUGCAUAAACAUCAACAGGCCAUU---------UGCGCCAUUUUCGGCAUAUUCCGCAU-UUCACCCAA
-.(((((..(((((((((((................)))).............((((...---------.).))).......)))))))..))))-)........ ( -19.39)
>DroGri_CAF1 10040 84 + 1
UUGGCACUGAAUAUGCGCAUAAAUUUCAAU--------GUACAUACAUCAACAGGCAAUU---------UUCGUCAUUGC--GCUU--UGAAUGGCGCAAACGAA
...((.(((..((((..(((........))--------)..))))......)))))....---------(((((..((((--(((.--.....)))))))))))) ( -21.80)
>DroSec_CAF1 1982 94 + 1
-UGAUGCCAAAUAUGCGCAUAACUUUGAGUAGACACGUGCAUAAACAUCAACAGGCCAUU---------UGCGCCAUUUUCGGCAUAUUCCACAU-UUCACCCAA
-..(((((...(((((((....((......))....)))))))..........((((...---------.).)))......))))).........-......... ( -19.80)
>DroSim_CAF1 2031 94 + 1
-UGAUGCCAAAUAUGCGCAUAAAUUUGAGUAGACACGUGCAUAAACAUCAACAGGCCAUU---------UGCGCCAUUUUCGGCAUAUUCCACAU-UUCACCCAA
-..(((((...(((((((..................)))))))..........((((...---------.).)))......))))).........-......... ( -18.97)
>DroEre_CAF1 1999 94 + 1
-UGAUGCCAAAUAUGCGCAUAAAUUUGACUAGACACAUGCAUAAGCAUCAACAGGCCAUU---------UGUGCCAUUUUCGGCAUAUUCCACAU-UUCACCCAA
-..(((((.((.(((.((((((((....((......((((....))))....))...)))---------)))))))).)).))))).........-......... ( -19.70)
>DroYak_CAF1 2395 103 + 1
-UGAUGCCAAAUAUGCGCAUAAAUUUGCCUAGACACAUGCAUAAGCAUCAACAGGCCAUUUGCACCAUUUGCGCCAUUUUCGGCAUAUUCUACAU-UUCACCCAA
-..((((((((...((((((((((..((((......((((....))))....)))).))))).......)))))...))).))))).........-......... ( -21.61)
>consensus
_UGAUGCCAAAUAUGCGCAUAAAUUUGACUAGACACGUGCAUAAACAUCAACAGGCCAUU_________UGCGCCAUUUUCGGCAUAUUCCACAU_UUCACCCAA
...(((((...((((((....................))))))..........(((((...........)).)))......)))))................... (-10.94 = -11.08 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:45 2006