| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,966,083 – 14,966,197 |
| Length | 114 |
| Max. P | 0.557547 |
| Location | 14,966,083 – 14,966,197 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.92 |
| Mean single sequence MFE | -32.85 |
| Consensus MFE | -19.35 |
| Energy contribution | -19.19 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.557547 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14966083 114 + 27905053 GCCGGCCACACAC----AAAGCACUGCAUAGUUGUGGGCUGGAAAAAUUAAACCACA-AAUGCGGGCGGGACGGAAGUGGUUACAACUCCAUGAAAGGAGGAU-ACAAAUCCACCGCCAA .((((((.(((((----...((...))...).))))))))))...............-......(((((...(((..((.......((((......))))...-.))..))).))))).. ( -35.60) >DroPse_CAF1 20603 117 + 1 GAAGGGAA--UAUAAA-AAAACGUUGCAUAGUUCUAGGCUGCAGAACAAAACCCACAAAAUGCGGGCGGGACGGAAGUGGUUACAACUCCCUGUUUGGAGGGGUUAACAGCCACUACCCC ...(((..--......-....((((.(...(((((.......)))))....(((.(.....).))).).))))..(((((((..((((((((....)).))))))...))))))).))). ( -35.00) >DroSec_CAF1 14437 112 + 1 GCCGGGCA--CAC----AAAGCACUGCACAGUUGUCGGCUGGAAAAAUUAAACCACA-AAUGCGGGCGGGACGGAAGUGGUUACAACUCCAUGAAAGGAGGAU-ACAAAUCCACCGCCAA ....(((.--...----...((.(((((...((((.((...((....))...)))))-).)))))))((...(((..((.......((((......))))...-.))..))).))))).. ( -29.80) >DroSim_CAF1 14499 112 + 1 GGCGGGCA--CAC----AAAGCACUGCAUAGUUGUGGGCUGGAAAAAUUAAACCACA-AAUGCGGGCGGGACGGAAGUGGUUACAACUCCAUGAAAGGAGGAU-ACAAAUCCACCACCAA ((.((...--...----...((.((((((..((((((..(((.....)))..)))))-)))))))))(((((....))........((((......))))...-.....))).)).)).. ( -34.20) >DroEre_CAF1 31294 112 + 1 ACAGGGCA--CAC----AAAGCGCUGCAUAGUUCUGGGCUGGAGAAAUAAAACCACA-AAUGCGGGCGGGACGGAAGUGGUUACAACUCCAUGAAAGGAGGAU-ACAAAUCCACCGCCAA .(((.((.--...----...)).)))..........((((((((......((((((.-..(.((.......)).).))))))....))))).....((.((((-....)))).))))).. ( -30.70) >DroPer_CAF1 20543 118 + 1 GAACGGAA--UAUAAAAAAAACGUUGCAUAGUUCUAGGCUUCAGAACAAAACCCACAAAAUGCGGGCGGGACGGAAGUGGUUACAACUCCCUGUUUGGAGGGGUUAACAGCCACUACCCC ....((..--...........((((.(...(((((.......)))))....(((.(.....).))).).))))..(((((((..((((((((....)).))))))...))))))).)).. ( -31.80) >consensus GCAGGGCA__CAC____AAAGCACUGCAUAGUUCUGGGCUGGAAAAAUAAAACCACA_AAUGCGGGCGGGACGGAAGUGGUUACAACUCCAUGAAAGGAGGAU_ACAAAUCCACCACCAA .......................((((.((((.....))))...........((.(.....).))))))...((..((((......((((......))))..........))))..)).. (-19.35 = -19.19 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:40 2006