Locus 5745

Sequence ID 3R_DroMel_CAF1
Location 14,959,168 – 14,959,288
Length 120
Max. P 0.834423
window9413

overview

Window 3

Location 14,959,168 – 14,959,288
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.50
Mean single sequence MFE -39.02
Consensus MFE -27.20
Energy contribution -27.65
Covariance contribution 0.45
Combinations/Pair 1.30
Mean z-score -1.86
Structure conservation index 0.70
SVM decision value 0.73
SVM RNA-class probability 0.834423
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14959168 120 - 27905053
UCCCCGAUUCCCUAAGUAGACCUAGCUGCUUAUCCAGGGCCACCACGGAUACGGAUUCUAGAGUCCAGCGGUUAAUGGUUUCCAAGAAAUUGCCAGGCACCUCCUGAGUGCUGGCAUCCC
...............(.((((((((((((((((((.((....))..))))).(((((....)))))))))))))..))))).).......((((((.((((....).))))))))).... ( -38.20)
>DroSim_CAF1 9360 120 - 1
UCCCCGAUUCCCUGAGCAGACCCAGCUGCUUAUCCAGGGCCACCACGGAUACGGAUUCCAGAGUCCAGCGGUUAAUGGUUUCCAAAAAAUUGCCAGGCACCUCCUGAGUGGUGGCAUCUC
.....(((..(((((((((......)))))....))))((((((((......(((((....))))).((((((..(((...)))...))))))((((.....)))).))))))))))).. ( -41.80)
>DroEre_CAF1 25948 120 - 1
UCCCCGAUUCCUUAAGCAGACCAAGCUGCUUAUCCAGGGCCACCACGGAUACGGAUUCUAGGGUCCAGCGGUUAAUGGUUUCCAAGAAAUUGCCGGGAACCUCCUGAGUGGUGGCAUCUC
.....(((.((((((((((......)))))))...)))(((((((((((...(((((....)))))...((((..(((....(((....))))))..)))))))...))))))))))).. ( -43.80)
>DroYak_CAF1 9695 120 - 1
UCCCCGAUUCCUUAAGCAGACCAAGCUGUUUAUCCAAGGCCACCACGGAUACGGAUUCUAGAGUCCAUCGGUUAAUGGUUUCCAGGAAAUUGCCAGGAACCUCCUGAGUGGUGGCAUCUC
.....(((....(((((((......)))))))......(((((((((((...(((((....)))))...((((..((((............))))..)))))))...))))))))))).. ( -39.10)
>DroAna_CAF1 9354 120 - 1
UUCCCGAAUCUUUCAGCAAUCCCAGCUGCUUGUCCAGAGCCACCACAGAAACAGACUCCAAAGUCCAUCUAUUGAUAGUUUCGAUAAAGUUUUCAGGCACCUCCUGGGUGGCGGGAUCUC
.((((........((((.......))))..........((((((...(((((.((((....)))).(((....))).)))))...........((((.....)))))))))))))).... ( -35.80)
>DroPer_CAF1 11632 120 - 1
CGUCCGACUCUUUGAGCAGUCCCAACUGCUUGUCCAGAGCCACCACAGAGACUGAUUCGAGGGUCCACCGGUUUAUAAUGCUUAUGAAAUCAUCAGGAACUUCCUGGGUGUCGACGUCAC
((((.(((.(((((((((((((.....((((.....)))).......).))))).))))))))))((((((((((((.....)))).))))..((((.....))))))))..)))).... ( -35.40)
>consensus
UCCCCGAUUCCUUAAGCAGACCCAGCUGCUUAUCCAGGGCCACCACGGAUACGGAUUCUAGAGUCCAGCGGUUAAUGGUUUCCAAGAAAUUGCCAGGAACCUCCUGAGUGGUGGCAUCUC
.....(((....(((((((......)))))))......((((((((......(((((....)))))...........................((((.....)))).))))))))))).. (-27.20 = -27.65 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:39 2006