Locus 5744

Sequence ID 3R_DroMel_CAF1
Location 14,958,797 – 14,958,917
Length 120
Max. P 0.603281
window9412

overview

Window 2

Location 14,958,797 – 14,958,917
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 85.00
Mean single sequence MFE -40.64
Consensus MFE -30.30
Energy contribution -29.83
Covariance contribution -0.47
Combinations/Pair 1.36
Mean z-score -2.19
Structure conservation index 0.75
SVM decision value 0.14
SVM RNA-class probability 0.603281
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14958797 120 + 27905053
AACAUAAUCUUUUUGCCCGGAAUGAUGGGAAGGGAUGGCUUAGUGAUGACACACAACCCAAAGGACUUUGAGGUGGUUUUCCGCAACGAAGGUGUGUGGCCAUUCAGACCGGGCAGUGAU
......(((...((((((((............((((((((((....)))((((((.((....)).(((((..((((....))))..))))).)))))))))))))...)))))))).))) ( -42.86)
>DroSec_CAF1 8930 120 + 1
AACAUAUUCUUUUUGCCCGGAAUGAUGGGAAGUGAUGGCUUUGUGAUGACACACAACCCAAAGGACUUUGAGGUGGUUUUCCGCAACGAAGGUGUGUGGCCAUUGAGACCGGGCAGUGAU
.......((...((((((((..(((((((((((....)))))....(.((((((..((....)).(((((..((((....))))..))))))))))).)))))))...)))))))).)). ( -42.10)
>DroSim_CAF1 8989 120 + 1
AACAUAUUCUUUUGGCCCGGAAUCAUGGGAAGUGAUGGCUUUGUGAUGACACACAACCCAAAGGACUUUGAGGUGGUUUUCCGCAACGAAGGAGUGUGGCCAUUGAGACCGGGCAGUGAU
..............((((((..(((((((((((....))))).......(((((..((....)).(((((..((((....))))..)))))..))))).))).)))..))))))...... ( -41.30)
>DroEre_CAF1 25573 120 + 1
AACAUAUUCUAUUUGUCCGGAAUGUUGAGAAGUAAUGCCUUUGUAAUGACCCAUAAUCCAAAGGACUUUGAGGCGGUUUUCCGCAAUGAAGGUGUGUGGCCAUUCAGACCGGGCAGUGAU
.......((...((((((((....(((((..((.(((((((..(..............((((....))))..((((....)))).)..)))))))...))..))))).)))))))).)). ( -33.80)
>DroYak_CAF1 9321 120 + 1
AACAUAUUCUAUUUGUCCGGAAUAAUGGGAAGUAAUGCCUUUGUAAUGACACAUAGUCCAAAGGACUUUGAGGUGGUUUUCCGCAAUGAAGGCGUGUGGCCAACCAGACCGGGCAGUGAU
.......((...((((((((.....(((...((.(((((((..(.......((.(((((...))))).))..((((....)))).)..)))))))...))...)))..)))))))).)). ( -40.40)
>DroAna_CAF1 8979 120 + 1
GAUAUAUUCUACCUGCCUGGAUUGAUGGGAAGCCCAGCCUUUCUGAUGACGUACAAUCCCGAGGAUUUCGAGGUGGUAUUCAGAAACGAGGGAGUGUGGCCUCUCAGACCAGGCAGUGAG
........((..((((((((.((((.(((..((((..(.(((((((....((((...((((((...)))).))..))))))))))).)..)).))....))).)))).))))))))..)) ( -43.40)
>consensus
AACAUAUUCUAUUUGCCCGGAAUGAUGGGAAGUGAUGCCUUUGUGAUGACACACAACCCAAAGGACUUUGAGGUGGUUUUCCGCAACGAAGGUGUGUGGCCAUUCAGACCGGGCAGUGAU
.......((...((((((((..((((((((((......)))).......(((((..((....)).(((((..((((....))))..)))))..))))).))).)))..)))))))).)). (-30.30 = -29.83 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:38 2006