Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 14,958,429 – 14,958,542 |
Length | 113 |
Max. P | 0.898394 |
Location | 14,958,429 – 14,958,542 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 85.18 |
Mean single sequence MFE | -26.51 |
Consensus MFE | -17.38 |
Energy contribution | -18.75 |
Covariance contribution | 1.38 |
Combinations/Pair | 1.22 |
Mean z-score | -2.52 |
Structure conservation index | 0.66 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.898394 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14958429 113 - 27905053 UUCUCAUUUCAAUUUAUUCGUAAAUUGCCACUGUUUUUAUACCAAAACCUUAUUAUUUGUUUACCUGUUGACUUGCAGAGAAGACGAUGGGUUUUUGCGACUGAAGUAUAUUA ............((((.(((((((..(((...(((((......)))))........((((((.(((((......)))).).))))))..))).))))))).))))........ ( -20.40) >DroSec_CAF1 8574 109 - 1 UUCUCAUUUCAAAUUAUUCGCAAAUUGCCACUGUUUUUAUACCAAAA----ACUAUUUUUUUACCUGUUGACUUGCUGAGAAGACGGUGGCUUUUUGCGACUGAAGUAUAUUG .....((((((......(((((((..((((((((((((.((.(((.(----((.............)))...))).)).))))))))))))..))))))).))))))...... ( -31.12) >DroSim_CAF1 8633 109 - 1 UUCUCAUUUCAAAUUACUCGUGAAUUGCCACUGUUUUUAUAACAAAA----AUUAUUUGUUUACCUGUUGACUUGCUGAGAAGACGGUGGCUUUUUGCGACUGAAGUAUAUUU .....((((((......(((..((..((((((((((((..((((((.----....)))))).....((......))...))))))))))))..))..))).))))))...... ( -28.60) >DroYak_CAF1 8945 110 - 1 UUCUCAUUUAGAAUGUUUCGUCGAUUGGCUCUAUUUUUAUAGUAAAAC---AAUGUUUGUUUACCUGUUGACUUGCAGAAAAUACGGUGGUUUUCUGCGACUGAAGAAUAUUU ...((.(((((........((((((.((..((((....))))..((((---(.....))))).)).))))))(((((((((((......))))))))))))))))))...... ( -25.90) >consensus UUCUCAUUUCAAAUUAUUCGUAAAUUGCCACUGUUUUUAUACCAAAA____AUUAUUUGUUUACCUGUUGACUUGCAGAGAAGACGGUGGCUUUUUGCGACUGAAGUAUAUUU .................(((((((..((((((((((((....((((.........)))).....((((......)))).))))))))))))..)))))))............. (-17.38 = -18.75 + 1.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:37 2006