Locus 5742

Sequence ID 3R_DroMel_CAF1
Location 14,956,649 – 14,956,740
Length 91
Max. P 0.588175
window9410

overview

Window 0

Location 14,956,649 – 14,956,740
Length 91
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 80.83
Mean single sequence MFE -29.57
Consensus MFE -24.62
Energy contribution -23.98
Covariance contribution -0.64
Combinations/Pair 1.16
Mean z-score -1.19
Structure conservation index 0.83
SVM decision value 0.11
SVM RNA-class probability 0.588175
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14956649 91 + 27905053
UGGUGCUGUCCAAGGACAUGGACAACAAGGACGCCCAGGCGCGACUCUGUGUGCUGCAGGGGUGAGUUGGGAUCAAACUCU----AAAACU-------UAUA--
..((((((((((......))))).....((....)).)))))..((((((.....))))))(((((((.(((......)))----..))))-------))).-- ( -27.60)
>DroPse_CAF1 6283 94 + 1
UGGUGCUGUCCAAGGACAUGGACAACAAGGAUGCCCAGGCGCGUCUCUGCGUGCUGCAGGGGUAAGACCAACUCCA---CUCUCUUUUGCU-------UAUCGA
(((((.((((((......)))))).).....(((((.(((((((....)))))))....)))))..))))......---............-------...... ( -29.10)
>DroSec_CAF1 6817 88 + 1
UGGUGCUGUCCAAAGACAUGGACAACAAGGACGCCCAGGCGCGACUCUGUGUGCUGCACGGGUGAGUUGAGAUCAA---CU----AUUGUC-------UAUA--
...((.((((((......)))))).)).((((((((.((((((......))))))....)))).(((((....)))---))----...)))-------)...-- ( -29.60)
>DroSim_CAF1 6854 88 + 1
UGGUGCUGUCCAAGGACAUGGACAACAAGGACGCCCAGGCGCGACUCUGUGUGCUGCAGGGGUGAGUUGAGAUCAA---CU----GUUGUC-------UAUA--
.......(((....)))(((((((((.....(((((.((((((......))))))....)))))(((((....)))---))----))))))-------))).-- ( -35.60)
>DroYak_CAF1 7163 95 + 1
UGGUGCUGUCAAAGGACAUGGACAACAAGGACGCCCAGGCACGACUCUGUGUGCUGCAGGGGUGAGUUGAAAUCAA---UC----AUUCUCCAUAACUUAUA--
..((.(((((....)))).).)).....((((((((.((((((......))))))....))))).((((....)))---).----....)))..........-- ( -26.00)
>DroPer_CAF1 6287 94 + 1
UGGUGCUGUCCAAGGACAUGGACAACAAGGAUGCCCAGGCGCGUCUCUGCGUGCUGCAGGGGUAAGACCAACUCCA---CUCAUUUUUGCU-------UAUCAA
(((((.((((((......)))))).((((((((....(((((((....)))))))...(((((.......))))).---..))))))))..-------))))). ( -29.50)
>consensus
UGGUGCUGUCCAAGGACAUGGACAACAAGGACGCCCAGGCGCGACUCUGUGUGCUGCAGGGGUGAGUUGAAAUCAA___CU____AUUGCC_______UAUA__
...((.((((((......)))))).))....(((((.((((((......))))))....)))))........................................ (-24.62 = -23.98 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:36 2006