Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,143,358 – 2,143,455 |
Length | 97 |
Max. P | 0.559618 |
Location | 2,143,358 – 2,143,455 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 81.02 |
Mean single sequence MFE | -29.10 |
Consensus MFE | -15.94 |
Energy contribution | -18.50 |
Covariance contribution | 2.56 |
Combinations/Pair | 1.12 |
Mean z-score | -1.92 |
Structure conservation index | 0.55 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.559618 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2143358 97 - 27905053 ------ACAUUUAUGAGUGACGCUUUUGGGUUAAUGAAAGUUUUCCUGAAAGCGAUUUCCACCACUCGGCGGCAUGCUGGAUGA--GGAUGUUCUAGCGCAACUU ------........(((((.((((((..((..(((....)))..))..))))))........)))))((..((..((((((...--......))))))))..)). ( -29.80) >DroSim_CAF1 301309 97 - 1 ------ACAUUUAUGAGUGACGCUUUUGGGUUAAUGAAAGUUUUCCUGAAAGCGAUUUCCACCACUCGGCGGCAUGCUGGAUGA--GGAUGUUCUAGCGCAACUU ------........(((((.((((((..((..(((....)))..))..))))))........)))))((..((..((((((...--......))))))))..)). ( -29.80) >DroEre_CAF1 290280 94 - 1 ------ACACUUAUGAGUGACGCUUUUGGGUUAAUGAAAGUUUUCCUGAAAGCGAUUUCCCCUACUCAGGG---UGCUGGAUGA--GGAUGUUCUAGCGCAACUU ------.((((....)))).((((((..((..(((....)))..))..))))))......(((....)))(---(((((((...--......))))))))..... ( -33.20) >DroYak_CAF1 291494 99 - 1 AAG---AGAUUUAUGAGUGACGCUUUUGGGUUAAUGAAAGUUUUCCUGAAAGCGAUUUCCACUUCUCAGGG---UGCUCGAUGAGCGGAUGUUCUAGCGCAACUU ..(---(((.....(((...((((((..((..(((....)))..))..))))))..)))....))))...(---((((....((((....)))).)))))..... ( -31.10) >DroAna_CAF1 259012 84 - 1 --AUGAACAC---UGAGUGACGCUUUUGGGUUAAGGAAAGUUUUGCUG------AUUUCCAGCUUACAGGA---UGCUC-------GGGUGUUCUUGCGCAACUA --..((((((---((((((...(((.((((((..(((((.........------.))))))))))).))).---)))))-------.)))))))........... ( -21.60) >consensus ______ACAUUUAUGAGUGACGCUUUUGGGUUAAUGAAAGUUUUCCUGAAAGCGAUUUCCACCACUCAGGG___UGCUGGAUGA__GGAUGUUCUAGCGCAACUU .............((((((.((((((((((..(((....)))..))))))))))........)))))).......((((((...........))))))....... (-15.94 = -18.50 + 2.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:29 2006