| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,949,572 – 14,949,683 |
| Length | 111 |
| Max. P | 0.761716 |
| Location | 14,949,572 – 14,949,683 |
|---|---|
| Length | 111 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 87.12 |
| Mean single sequence MFE | -26.13 |
| Consensus MFE | -20.33 |
| Energy contribution | -20.67 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.761716 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14949572 111 - 27905053 AACAACCUUAGGCCAUAUUCUGCAAGGGAAAAAUGGGAAAAAAACAUUGAAUCAGUUAAGCGGUCGUGAGUUAUGGUUUGAUGAAGAUGAUGAUGAUGAGGUUGUUAGUUC ((((((((((..((((.((((.....))))..))))........((((..(((.(((((((.(((....)..)).)))))))...)))...)))).))))))))))..... ( -27.50) >DroSec_CAF1 85268 103 - 1 AACAACCUUAGGCCAUAUUCUGCAAGGGAAAAAGGGGGA-AAAACAUUGAAUCAGUUAAGUG-UCGUGAGCUAUGGUUUGAUGAUG------AUGAUGAGGUUGUUAGUUC ((((((((((...(((.((((.(...........).)))-)...(((..(((((....(((.-......))).)))))..)))...------))).))))))))))..... ( -24.40) >DroYak_CAF1 82305 100 - 1 -ACAACCUUAUGCCAUAUUCUGCAAGGGAAAA-UGGGAA---AAAAUUAAAUCAGAUAAGUGGUCGUGAGUUAUGGUUUGAUGAUG------AUGAUGAGGUUGUUAGUUC -((((((((((.((((.((((.....)))).)-)))...---...((((.(((((((..((((.(....))))).)))))))..))------)).))))))))))...... ( -26.50) >consensus AACAACCUUAGGCCAUAUUCUGCAAGGGAAAAAUGGGAA_AAAACAUUGAAUCAGUUAAGUGGUCGUGAGUUAUGGUUUGAUGAUG______AUGAUGAGGUUGUUAGUUC ((((((((((..(((..((((.....))))...)))........((((((((((....(((........))).)))))))))).............))))))))))..... (-20.33 = -20.67 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:29 2006