| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,949,161 – 14,949,266 |
| Length | 105 |
| Max. P | 0.995476 |
| Location | 14,949,161 – 14,949,266 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.93 |
| Mean single sequence MFE | -28.61 |
| Consensus MFE | -19.24 |
| Energy contribution | -19.02 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.78 |
| Structure conservation index | 0.67 |
| SVM decision value | 2.58 |
| SVM RNA-class probability | 0.995476 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14949161 105 + 27905053 AAUCGAUGGGUUUUCCAGGCAGAGAGAGAGAUGUGACAAUCACAGUACAGUAAAUUAUGUGGUUGUCAAGCCCAUCUAUCCA---------------UUUCCACAUUUUCCCAACCACCA ......((((.......((.(((..((.((((((((((((((((.............)))))))))))....))))).))..---------------))))).......))))....... ( -27.86) >DroSim_CAF1 77795 117 + 1 AAUCGAUGGUUUUUCCAGG--GAGAGGGAGAUGUGACAAUCACAGUACUGUAAAUUAUGUGGUUGUCA-GCCCAUCUAUCCAUCCAUCCCAUACCAUUUUCCACCAUUUCCCAACUACCA ....((((((........(--((..(((((((((((((((((((.............)))))))))))-...))))).))).))).......))))))...................... ( -31.08) >DroYak_CAF1 81899 107 + 1 AAUCCAUGGUUUUUCCAGG--GA----GAGAUGUGACAAUCACGGU-----AAAUUAUGUGGUUGUCA-GCCCAUCUAUUCCUCCAUCCCAUACU-UUUUCCACAUUUUCCCGACUACCA .....((((..(....(((--((----.((((((((((((((((..-----......)))))))))))-...))))).)))))..)..))))...-........................ ( -26.90) >consensus AAUCGAUGGUUUUUCCAGG__GAGAG_GAGAUGUGACAAUCACAGUAC_GUAAAUUAUGUGGUUGUCA_GCCCAUCUAUCCAUCCAUCCCAUAC__UUUUCCACAUUUUCCCAACUACCA ......(((.....)))...........((((((((((((((((.............)))))))))))....)))))........................................... (-19.24 = -19.02 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:24 2006