Locus 5736

Sequence ID 3R_DroMel_CAF1
Location 14,948,266 – 14,948,654
Length 388
Max. P 0.953024
window9388 window9389 window9390 window9391 window9392 window9393 window9394 window9395 window9396

overview

Window 8

Location 14,948,266 – 14,948,383
Length 117
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 94.12
Mean single sequence MFE -38.88
Consensus MFE -32.86
Energy contribution -32.42
Covariance contribution -0.44
Combinations/Pair 1.06
Mean z-score -2.12
Structure conservation index 0.85
SVM decision value 0.20
SVM RNA-class probability 0.633060
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14948266 117 + 27905053
CGUGGCAGCAACAGAAGUCGAGCACUGCGGCCACAUUUAACAAUGGGUCAACUUUCCUCGGCGC---UGGCGUUGAUAAAUGUUGCCUCAAAACAAGCCAGAAACUAUAAUGUUGCUGUU
...((((((((((...((((((......((((.((((....)))))))).......)))))).(---((((.((((...........)))).....))))).........)))))))))) ( -37.32)
>DroSim_CAF1 76881 117 + 1
CGUGGCAGCAACAGAAGUCGAGCACUCCGGCCACAUUUAACAAUGGGUCAACUUUCCUCGGCGC---UGGCGUUGAUAAAUGUUGCCUCAAAAUAAGCCAGAAACUGUGAUGUUGCUGUU
...((((((((((...((((((......((((.((((....)))))))).......)))))).(---((((.((((...........)))).....))))).........)))))))))) ( -37.32)
>DroYak_CAF1 80950 119 + 1
CGUGGCAGCAACAGAAGUCGAGCACUUCGGCCACAUUUAACAAUGGGUCAACUUUCCUUGGCGCUGCUGGCGUUGAUAAAUGUUGCC-CAAAACAAGCCAGAAACUGUGGUGUUGCUGUU
...(((((((((.(((((.....))))).((((((........((((.((((.((..(..((((.....))))..)..)).))))))-))...(......)....))))))))))))))) ( -42.00)
>consensus
CGUGGCAGCAACAGAAGUCGAGCACUCCGGCCACAUUUAACAAUGGGUCAACUUUCCUCGGCGC___UGGCGUUGAUAAAUGUUGCCUCAAAACAAGCCAGAAACUGUGAUGUUGCUGUU
...((((((((((...((((((......((((.((((....)))))))).......)))))).....(((((((....)))(((.......)))..))))..........)))))))))) (-32.86 = -32.42 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 9

Location 14,948,306 – 14,948,423
Length 117
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 94.37
Mean single sequence MFE -38.27
Consensus MFE -34.92
Energy contribution -34.55
Covariance contribution -0.37
Combinations/Pair 1.06
Mean z-score -1.95
Structure conservation index 0.91
SVM decision value 1.10
SVM RNA-class probability 0.915851
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14948306 117 + 27905053
CAAUGGGUCAACUUUCCUCGGCGC---UGGCGUUGAUAAAUGUUGCCUCAAAACAAGCCAGAAACUAUAAUGUUGCUGUUGCUGUCAUCUUCAUUGUUGUCGCCGCGACAGCAGCAGCAU
...((((.((((.((..((((((.---...))))))..)).)))).)))).......................(((((((((((((.....((....)).......))))))))))))). ( -36.90)
>DroSec_CAF1 83999 117 + 1
CAAUGGGUCAACUUUCCUCGGCGC---UGGCGUUGAUGAAUGUUGCCUUAAAAUAAGCCAGAAACUGCGAUGUUGCUGUUGCUGUCAUCUUCAUUGUUGUCGCCGCGACAGCAGCAACAU
....(((.((((.(((.((((((.---...)))))).))).)))))))........((........))(.((((((((((((((.((.(......).)).))..)))))))))))).).. ( -38.20)
>DroSim_CAF1 76921 117 + 1
CAAUGGGUCAACUUUCCUCGGCGC---UGGCGUUGAUAAAUGUUGCCUCAAAAUAAGCCAGAAACUGUGAUGUUGCUGUUGCUGUCAUCUUCAUUGUUGUCGCCGCGACAGCAGCAACAU
...((((.((((.((..((((((.---...))))))..)).)))).))))................(((.((((((((((((((.((.(......).)).))..)))))))))))).))) ( -36.70)
>DroYak_CAF1 80990 119 + 1
CAAUGGGUCAACUUUCCUUGGCGCUGCUGGCGUUGAUAAAUGUUGCC-CAAAACAAGCCAGAAACUGUGGUGUUGCUGUUGCUGUCAUCUUCAUUGUUGUCGCCGCGACAGCAGCAACAU
...((((.((((.((..(..((((.....))))..)..)).))))))-))......((((.......))))(((((((((((((.((.(......).)).))..)))))))))))..... ( -41.30)
>consensus
CAAUGGGUCAACUUUCCUCGGCGC___UGGCGUUGAUAAAUGUUGCCUCAAAACAAGCCAGAAACUGUGAUGUUGCUGUUGCUGUCAUCUUCAUUGUUGUCGCCGCGACAGCAGCAACAU
...((((.((((.((..(((((((.....)))))))..)).)))))).))....................((((((((((((((.((.(......).)).))..)))))))))))).... (-34.92 = -34.55 +  -0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 14,948,343 – 14,948,463
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 86.64
Mean single sequence MFE -32.62
Consensus MFE -22.79
Energy contribution -23.10
Covariance contribution 0.31
Combinations/Pair 1.08
Mean z-score -2.96
Structure conservation index 0.70
SVM decision value 1.43
SVM RNA-class probability 0.953024
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14948343 120 + 27905053
UGUUGCCUCAAAACAAGCCAGAAACUAUAAUGUUGCUGUUGCUGUCAUCUUCAUUGUUGUCGCCGCGACAGCAGCAGCAUGGCCAAAAACACCAGCAACAUCAGCAACACCUUCAAAUUU
((((((..........((((..(((......)))((((((((((((.....((....)).......)))))))))))).))))...........)))))).................... ( -33.30)
>DroSec_CAF1 84036 111 + 1
UGUUGCCUUAAAAUAAGCCAGAAACUGCGAUGUUGCUGUUGCUGUCAUCUUCAUUGUUGUCGCCGCGACAGCAGCAACAUCGCCAAAAACACCAGC---------AACACCUUCAAAUUU
((((((((((...)))).........(((((((((((((((.(((......((....)).....))).)))))))))))))))...........))---------))))........... ( -33.40)
>DroSim_CAF1 76958 111 + 1
UGUUGCCUCAAAAUAAGCCAGAAACUGUGAUGUUGCUGUUGCUGUCAUCUUCAUUGUUGUCGCCGCGACAGCAGCAACAUGGCCAAAAACCCCAGC---------AACACCUUCAAAUUU
((((((..........((((.....(((..((((((((((((((.((.(......).)).))..)))))))))))))))))))...........))---------))))........... ( -30.90)
>DroYak_CAF1 81030 119 + 1
UGUUGCC-CAAAACAAGCCAGAAACUGUGGUGUUGCUGUUGCUGUCAUCUUCAUUGUUGUCGCCGCGACAGCAGCAACAUGGCCACCAACAUCAUAAACACCAGCAACACUCCCAGAUUU
((((((.-..........(((...)))(((((((..(((((..(((((.....(((((((((...)))))))))....)))))...))))).....)))))))))))))........... ( -32.90)
>consensus
UGUUGCCUCAAAACAAGCCAGAAACUGUGAUGUUGCUGUUGCUGUCAUCUUCAUUGUUGUCGCCGCGACAGCAGCAACAUGGCCAAAAACACCAGC_________AACACCUUCAAAUUU
((((.......)))).........(((((.((((((((((((((.((.(......).)).))..)))))))))))).)))))...................................... (-22.79 = -23.10 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 14,948,343 – 14,948,463
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 86.64
Mean single sequence MFE -37.52
Consensus MFE -28.79
Energy contribution -32.23
Covariance contribution 3.44
Combinations/Pair 1.06
Mean z-score -2.00
Structure conservation index 0.77
SVM decision value 0.83
SVM RNA-class probability 0.862279
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14948343 120 - 27905053
AAAUUUGAAGGUGUUGCUGAUGUUGCUGGUGUUUUUGGCCAUGCUGCUGCUGUCGCGGCGACAACAAUGAAGAUGACAGCAACAGCAACAUUAUAGUUUCUGGCUUGUUUUGAGGCAACA
.........(((((((((...(((((((..(((((((....((.((((((....)))))).))....)))))))..))))))))))))))))...(((((...........))))).... ( -38.30)
>DroSec_CAF1 84036 111 - 1
AAAUUUGAAGGUGUU---------GCUGGUGUUUUUGGCGAUGUUGCUGCUGUCGCGGCGACAACAAUGAAGAUGACAGCAACAGCAACAUCGCAGUUUCUGGCUUAUUUUAAGGCAACA
.........(.((((---------((((..(((((((..(.(((((((((....))))))))).)..)))))))..)))))))).)................((((......)))).... ( -36.40)
>DroSim_CAF1 76958 111 - 1
AAAUUUGAAGGUGUU---------GCUGGGGUUUUUGGCCAUGUUGCUGCUGUCGCGGCGACAACAAUGAAGAUGACAGCAACAGCAACAUCACAGUUUCUGGCUUAUUUUGAGGCAACA
.........(.((((---------((((..(((((((....(((((((((....)))))))))....)))))))..)))))))).).......(((...)))((((......)))).... ( -37.30)
>DroYak_CAF1 81030 119 - 1
AAAUCUGGGAGUGUUGCUGGUGUUUAUGAUGUUGGUGGCCAUGUUGCUGCUGUCGCGGCGACAACAAUGAAGAUGACAGCAACAGCAACACCACAGUUUCUGGCUUGUUUUG-GGCAACA
....(((.(.(((((((((.((((..(.((.((.((.....(((((((((....)))))))))...)).)).)).).)))).)))))))))).)))......((((.....)-))).... ( -38.10)
>consensus
AAAUUUGAAGGUGUU_________GCUGGUGUUUUUGGCCAUGUUGCUGCUGUCGCGGCGACAACAAUGAAGAUGACAGCAACAGCAACAUCACAGUUUCUGGCUUAUUUUGAGGCAACA
.........((((((((((.....((((..(((((((....(((((((((....)))))))))....)))))))..))))..))))))))))..........((((......)))).... (-28.79 = -32.23 +   3.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 2

Location 14,948,383 – 14,948,503
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 88.47
Mean single sequence MFE -36.78
Consensus MFE -28.27
Energy contribution -29.21
Covariance contribution 0.94
Combinations/Pair 1.06
Mean z-score -1.60
Structure conservation index 0.77
SVM decision value 0.24
SVM RNA-class probability 0.650962
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14948383 120 - 27905053
AAGUGUGUCACUUGAACCAAAACACCAAGUUUAGGUGCUGAAAUUUGAAGGUGUUGCUGAUGUUGCUGGUGUUUUUGGCCAUGCUGCUGCUGUCGCGGCGACAACAAUGAAGAUGACAGC
.....((((((((.(..((.((((((...(((((((......)))))))))))))..)).((((((((((.......)))).)).(((((....)))))))))....).))).))))).. ( -32.30)
>DroSec_CAF1 84076 111 - 1
AAGUGUGUCACUUGAACCAAAACACCAAGUUUAGGCGCUCAAAUUUGAAGGUGUU---------GCUGGUGUUUUUGGCGAUGUUGCUGCUGUCGCGGCGACAACAAUGAAGAUGACAGC
.....((((((((.(.(((((((((((.((...((((((((....)))..)))))---------))))))).)))))).(.(((((((((....))))))))).)..).))).))))).. ( -37.60)
>DroSim_CAF1 76998 111 - 1
AAGUGUGUCACUUGAACCAAAACACCAAGUUUAGGCGCACAAAUUUGAAGGUGUU---------GCUGGGGUUUUUGGCCAUGUUGCUGCUGUCGCGGCGACAACAAUGAAGAUGACAGC
..((((((((((((...........)))))...)))))))...............---------((((..(((((((....(((((((((....)))))))))....)))))))..)))) ( -36.40)
>DroYak_CAF1 81069 120 - 1
AAGUGUGUCACUUGAACCAAAACACCAAGUUUAGGCGCUCAAAUCUGGGAGUGUUGCUGGUGUUUAUGAUGUUGGUGGCCAUGUUGCUGCUGUCGCGGCGACAACAAUGAAGAUGACAGC
.....((((((((.(((((((((((((.((...(((((((........)))))))))))))))).......))))).....(((((((((....)))))))))....).))).))))).. ( -40.81)
>consensus
AAGUGUGUCACUUGAACCAAAACACCAAGUUUAGGCGCUCAAAUUUGAAGGUGUU_________GCUGGUGUUUUUGGCCAUGUUGCUGCUGUCGCGGCGACAACAAUGAAGAUGACAGC
.....((((((((.(.(((((((((((......((((((..........))))))...........))))))).))))...(((((((((....)))))))))....).))).))))).. (-28.27 = -29.21 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 3

Location 14,948,423 – 14,948,543
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 87.09
Mean single sequence MFE -33.75
Consensus MFE -23.84
Energy contribution -23.52
Covariance contribution -0.31
Combinations/Pair 1.10
Mean z-score -1.55
Structure conservation index 0.71
SVM decision value 0.09
SVM RNA-class probability 0.581030
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14948423 120 - 27905053
AGCCAUUAACUUCUUCAUAUGGCUGUGAGCAUCUCUACGCAAGUGUGUCACUUGAACCAAAACACCAAGUUUAGGUGCUGAAAUUUGAAGGUGUUGCUGAUGUUGCUGGUGUUUUUGGCC
.((((..(((....(((..((((...(((...)))(((....))).))))..)))((((.((((((...(((((((......)))))))))))))((.......)))))))))..)))). ( -31.80)
>DroSec_CAF1 84116 109 - 1
AGCCAUUAACUUCUUCAUAUGGCUGUGAGCAUC--UACGCAAGUGUGUCACUUGAACCAAAACACCAAGUUUAGGCGCUCAAAUUUGAAGGUGUU---------GCUGGUGUUUUUGGCG
.((((..(((....(((..((((((....))..--(((....))).))))..)))((((.((((((..((....))..(((....))).))))))---------..)))))))..)))). ( -30.80)
>DroSim_CAF1 77038 109 - 1
AGCCAUUAACUUCUUCAUAUGGCUGUGAGCAUC--UACGCAAGUGUGUCACUUGAACCAAAACACCAAGUUUAGGCGCACAAAUUUGAAGGUGUU---------GCUGGGGUUUUUGGCC
.((((..((((((.(((((....)))))(((((--(...(((((((((((((((...........)))))...)))))))....))).)))))).---------...))))))..)))). ( -31.70)
>DroYak_CAF1 81109 118 - 1
AGCCAUUAACUUCUUCAUAUAGCUGUGAGCAUC--UGCGCAAGUGUGUCACUUGAACCAAAACACCAAGUUUAGGCGCUCAAAUCUGGGAGUGUUGCUGGUGUUUAUGAUGUUGGUGGCC
.(((((((((....((((......((((.(((.--.((....)))))))))........((((((((.((...(((((((........))))))))))))))))))))).))))))))). ( -40.70)
>consensus
AGCCAUUAACUUCUUCAUAUGGCUGUGAGCAUC__UACGCAAGUGUGUCACUUGAACCAAAACACCAAGUUUAGGCGCUCAAAUUUGAAGGUGUU_________GCUGGUGUUUUUGGCC
.((((..(((.((.(((((....)))))(((((...((....))((((((((((...........)))))...)))))...........))))).............)).)))..)))). (-23.84 = -23.52 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 4

Location 14,948,503 – 14,948,623
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 94.40
Mean single sequence MFE -23.59
Consensus MFE -19.56
Energy contribution -20.31
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -1.90
Structure conservation index 0.83
SVM decision value 0.39
SVM RNA-class probability 0.715518
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14948503 120 - 27905053
UCUAGUGAACCACUUUACACAACUUCCAGCGGCAACAUAGCCAUUCCGCCGCUAACAAUGUAACUAUUUUGAGCUCUUUAAGCCAUUAACUUCUUCAUAUGGCUGUGAGCAUCUCUACGC
..(((.((......(((((........((((((..............)))))).....))))).........((((....((((((............))))))..)))).)).)))... ( -26.46)
>DroSec_CAF1 84187 118 - 1
UCUAGUGAACCACUUUACACAACUCCCAGCGGCAACAUCACCAUCCCGCCGCUAACAAUGUAACUAUUUUGAGCUCUUUAAGCCAUUAACUUCUUCAUAUGGCUGUGAGCAUC--UACGC
....(((((....))))).........((((((..............))))))...................((((....((((((............))))))..))))...--..... ( -25.64)
>DroSim_CAF1 77109 118 - 1
UCUAGUGAACCACUUUACACAACUCUCAGCGGCAACAUCGCCAUCCCGCCGCUAACAAUGUAACUAUUUUGAGCUCUUUAAGCCAUUAACUUCUUCAUAUGGCUGUGAGCAUC--UACGC
....(((((....))))).........((((((..............))))))...................((((....((((((............))))))..))))...--..... ( -25.64)
>DroYak_CAF1 81189 118 - 1
UCUACUGAACCACUUUACACUACUCCCAGCGGCAACAUCACCAUCCCACCGCUAACAAUGUAACUAUUUUGAGGUCUUUAAGCCAUUAACUUCUUCAUAUAGCUGUGAGCAUC--UGCGC
..........(((.(((((........(((((................))))).....)))))((((..(((((...((((....))))...))))).))))..))).((...--.)).. ( -16.61)
>consensus
UCUAGUGAACCACUUUACACAACUCCCAGCGGCAACAUCACCAUCCCGCCGCUAACAAUGUAACUAUUUUGAGCUCUUUAAGCCAUUAACUUCUUCAUAUGGCUGUGAGCAUC__UACGC
..............(((((........((((((..............)))))).....))))).........((((....((((((............))))))..)))).......... (-19.56 = -20.31 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 5

Location 14,948,543 – 14,948,654
Length 111
Sequences 4
Columns 111
Reading direction forward
Mean pairwise identity 94.89
Mean single sequence MFE -31.85
Consensus MFE -29.92
Energy contribution -30.05
Covariance contribution 0.13
Combinations/Pair 1.06
Mean z-score -1.46
Structure conservation index 0.94
SVM decision value 0.20
SVM RNA-class probability 0.632648
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14948543 111 + 27905053
UAAAGAGCUCAAAAUAGUUACAUUGUUAGCGGCGGAAUGGCUAUGUUGCCGCUGGAAGUUGUGUAAAGUGGUUCACUAGAAACGCCCCAAAAUUGUCGGAGGCAUUCUAAG
....((((.((......((((((..((((((((((.((....)).)))))))))).....))))))..))))))..(((((..(((((.........)).))).))))).. ( -30.80)
>DroSec_CAF1 84225 111 + 1
UAAAGAGCUCAAAAUAGUUACAUUGUUAGCGGCGGGAUGGUGAUGUUGCCGCUGGGAGUUGUGUAAAGUGGUUCACUAGAAACGCCCCAAAAUUGUCGGAGGCAUUCUAAG
....((((.((......(((((((.((((((((((.((....)).)))))))))).)...))))))..))))))..(((((..(((((.........)).))).))))).. ( -32.90)
>DroSim_CAF1 77147 111 + 1
UAAAGAGCUCAAAAUAGUUACAUUGUUAGCGGCGGGAUGGCGAUGUUGCCGCUGAGAGUUGUGUAAAGUGGUUCACUAGAAACGCCCCAAAAUUGUCGGAGGCAUUCUAAG
....((((.((......(((((((.((((((((((.((....)).)))))))))).)...))))))..))))))..(((((..(((((.........)).))).))))).. ( -33.70)
>DroYak_CAF1 81227 111 + 1
UAAAGACCUCAAAAUAGUUACAUUGUUAGCGGUGGGAUGGUGAUGUUGCCGCUGGGAGUAGUGUAAAGUGGUUCAGUAGAAACGCCCCAAAAUUGUUGGAGGCAUUCUUAG
....((((.(.......(((((((((((((((..(.((....)).)..)))))))...)))))))).).))))....((((..(((((((.....)))).))).))))... ( -30.00)
>consensus
UAAAGAGCUCAAAAUAGUUACAUUGUUAGCGGCGGGAUGGCGAUGUUGCCGCUGGGAGUUGUGUAAAGUGGUUCACUAGAAACGCCCCAAAAUUGUCGGAGGCAUUCUAAG
....((((.((......((((((..((((((((((.((....)).)))))))))).....))))))..))))))..(((((..(((((.........)).))).))))).. (-29.92 = -30.05 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 6

Location 14,948,543 – 14,948,654
Length 111
Sequences 4
Columns 111
Reading direction reverse
Mean pairwise identity 94.89
Mean single sequence MFE -23.73
Consensus MFE -21.73
Energy contribution -22.29
Covariance contribution 0.56
Combinations/Pair 1.03
Mean z-score -1.59
Structure conservation index 0.92
SVM decision value 0.38
SVM RNA-class probability 0.711366
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14948543 111 - 27905053
CUUAGAAUGCCUCCGACAAUUUUGGGGCGUUUCUAGUGAACCACUUUACACAACUUCCAGCGGCAACAUAGCCAUUCCGCCGCUAACAAUGUAACUAUUUUGAGCUCUUUA
(((((((((((.((((.....)))))))(((....(((((....))))).........((((((..............))))))))).........))))))))....... ( -24.94)
>DroSec_CAF1 84225 111 - 1
CUUAGAAUGCCUCCGACAAUUUUGGGGCGUUUCUAGUGAACCACUUUACACAACUCCCAGCGGCAACAUCACCAUCCCGCCGCUAACAAUGUAACUAUUUUGAGCUCUUUA
(((((((((((.((((.....)))))))(((....(((((....))))).........((((((..............))))))))).........))))))))....... ( -24.94)
>DroSim_CAF1 77147 111 - 1
CUUAGAAUGCCUCCGACAAUUUUGGGGCGUUUCUAGUGAACCACUUUACACAACUCUCAGCGGCAACAUCGCCAUCCCGCCGCUAACAAUGUAACUAUUUUGAGCUCUUUA
(((((((((((.((((.....)))))))(((....(((((....))))).........((((((..............))))))))).........))))))))....... ( -24.94)
>DroYak_CAF1 81227 111 - 1
CUAAGAAUGCCUCCAACAAUUUUGGGGCGUUUCUACUGAACCACUUUACACUACUCCCAGCGGCAACAUCACCAUCCCACCGCUAACAAUGUAACUAUUUUGAGGUCUUUA
.((..((((((.((((.....))))))))))..))....(((................(((((................)))))..(((..........))).)))..... ( -20.09)
>consensus
CUUAGAAUGCCUCCGACAAUUUUGGGGCGUUUCUAGUGAACCACUUUACACAACUCCCAGCGGCAACAUCACCAUCCCGCCGCUAACAAUGUAACUAUUUUGAGCUCUUUA
(((((((((((.((((.....)))))))(((....(((((....))))).........((((((..............))))))))).........))))))))....... (-21.73 = -22.29 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:23 2006