Locus 5732

Sequence ID 3R_DroMel_CAF1
Location 14,947,277 – 14,947,396
Length 119
Max. P 0.807200
window9379

overview

Window 9

Location 14,947,277 – 14,947,396
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 92.33
Mean single sequence MFE -33.98
Consensus MFE -29.26
Energy contribution -30.83
Covariance contribution 1.56
Combinations/Pair 1.03
Mean z-score -1.75
Structure conservation index 0.86
SVM decision value 0.64
SVM RNA-class probability 0.807200
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14947277 119 + 27905053
UAGAUAGCAAACUUGGCUAACGAGCUGACGUCCUGGCCAGGCAUAAAUUAGCCAUCUUUGGUCAGGAGCUUAGCGCUGGCCUGAAAUUUAUGUAGAUUUAUUUGUGUAACACUUUUGC-C
......(((((...(((((....(((((..((((((((((((........))).....)))))))))..)))))..)))))......(((..((((....))))..)))....)))))-. ( -37.20)
>DroSec_CAF1 82976 110 + 1
---------AACUUGGCUAACGAGCUGACGUCCUGGCCAGGCAUAUAUUAGCCAUCUUUGGUCAGGAGCUUAGCGCUGGCCUGAAAUUUAUGUAGAUUUAUUUGUGUAACACUUUUGC-C
---------.....(((((....(((((..((((((((((((........))).....)))))))))..)))))..)))))......(((..((((....))))..))).........-. ( -33.30)
>DroSim_CAF1 75889 119 + 1
UAGAUAGCAAACUUGGCUAACGAGCUGACGUCCUGGCCAGGCAUAUAUUAGCCAUCUUUGGUCAGGAGCUUAGCGCUGGCCUGAAAUUUAUGUAGAUUUAUUUGUGUAACACUUUUGC-C
......(((((...(((((....(((((..((((((((((((........))).....)))))))))..)))))..)))))......(((..((((....))))..)))....)))))-. ( -37.20)
>DroYak_CAF1 79986 120 + 1
UAGAUAGCACACUUAGCUAACGAGCUGACGUCCUGGCCAAGCAUAAAUUAGCCAUCUUUAGUCAGGAGUUUAGCGCUGGUCUGAAAGUUAUGUAGAUUUAUUUGUGUAACACUUUUGCAC
((((((((........(....).(((((..(((((((.((((........)).....)).)))))))..)))))))).)))))...((((..((((....))))..)))).......... ( -28.20)
>consensus
UAGAUAGCAAACUUGGCUAACGAGCUGACGUCCUGGCCAGGCAUAAAUUAGCCAUCUUUGGUCAGGAGCUUAGCGCUGGCCUGAAAUUUAUGUAGAUUUAUUUGUGUAACACUUUUGC_C
......(((((...(((((....(((((..((((((((((((........))).....)))))))))..)))))..)))))......(((..((((....))))..)))....))))).. (-29.26 = -30.83 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:07 2006