Locus 5731

Sequence ID 3R_DroMel_CAF1
Location 14,946,949 – 14,947,056
Length 107
Max. P 0.595384
window9378

overview

Window 8

Location 14,946,949 – 14,947,056
Length 107
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 85.53
Mean single sequence MFE -29.23
Consensus MFE -22.91
Energy contribution -22.85
Covariance contribution -0.06
Combinations/Pair 1.11
Mean z-score -1.51
Structure conservation index 0.78
SVM decision value 0.12
SVM RNA-class probability 0.595384
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14946949 107 + 27905053
GCUUUUGGCUGAAAGCAAAAAAA-----AU-UAAAACCUGUUGGCCUCGAUUGCCUGCGGGC-------UGCGGUCAAGCUAACUGUUUUGCCCGAUCAGAUUAAAGCAAAUACAAAAUG
(((((...((((...........-----..-........((.(((.......))).))((((-------.(((((.......)))))...))))..))))...)))))............ ( -27.90)
>DroSec_CAF1 82665 113 + 1
GCUUUUGGCCGAAAGCAAAAAAAAAAAAAUGAAAAACCUGUUGGCCUCGGUUGCCUGCGGGC-------UGCGGUCAAGCUAACUGUUUUGCCCGAUCAGAUUAAAGCAAAUACAAAAUG
(((((.((((((.((......................)).))))))........((((((((-------.(((((.......)))))...)))))..)))...)))))............ ( -27.55)
>DroSim_CAF1 75556 111 + 1
GCUUUUGGCCAAAAGCAAAAA--AAAAAAUGAAAAACCUGUUGGCCUCGAUUGCCUGCGGGC-------UGCGGUCAAGCUAACUGUUUUGCCCGAUCAGAUUAAAGCAAAUACAAAAUG
(((((.((((((.((......--..............)).))))))........((((((((-------.(((((.......)))))...)))))..)))...)))))............ ( -27.95)
>DroYak_CAF1 79658 102 + 1
GCUUCUGGCCGAAA------------------AAAACCUGUUGGCCUCGAUUGGCUGCGGGCUGCGAGCUGCGGUCAAGCUAACUGUUUUGCCCGAUCAGAUUAAAGCAAAUACAAAAUG
(((((((..((...------------------(((((..((((((.....((((((((((........)))))))))))))))).)))))...))..))))....)))............ ( -33.50)
>consensus
GCUUUUGGCCGAAAGCAAAAA_______AU_AAAAACCUGUUGGCCUCGAUUGCCUGCGGGC_______UGCGGUCAAGCUAACUGUUUUGCCCGAUCAGAUUAAAGCAAAUACAAAAUG
(((((.((((((.((......................)).))))))..((((.....(((((........(((((.......)))))...)))))....)))))))))............ (-22.91 = -22.85 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:06 2006