Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,141,446 – 2,141,564 |
Length | 118 |
Max. P | 0.982527 |
Location | 2,141,446 – 2,141,541 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 67.69 |
Mean single sequence MFE | -29.89 |
Consensus MFE | -8.46 |
Energy contribution | -11.68 |
Covariance contribution | 3.23 |
Combinations/Pair | 1.17 |
Mean z-score | -2.75 |
Structure conservation index | 0.28 |
SVM decision value | 1.92 |
SVM RNA-class probability | 0.982527 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2141446 95 + 27905053 ACUGUUAGGUUGCACUUAAAUUGCAGGGCCAAGGUGCACUUCGAAUAGGAAAAGACA--------UUGCAAUUUCACUUGCAAUUGCAU-UUGCAAUUGCAGGU .(((((.((.(((((((..............)))))))..)).))))).........--------..........((((((((((((..-..)))))))))))) ( -27.84) >DroPse_CAF1 256021 100 + 1 ACAGCUUGGA-ACAGACAAAUUGCAGAGA--AGACUGGCUACGGGUACGGCUACCCAUUGCGGCCCAUUGAUU-GCCUUGCCAUUUAUUUGUGCAAUUGCAGGU ...(((((..-.......(((((((.(((--.((.((((...(((((....))))).....(((.........-)))..)))).)).))).))))))).))))) ( -27.40) >DroSec_CAF1 284125 94 + 1 ACUGUUGGGUUGCACUUU-AUUGCAGGGCAAAGGUGCAAUUCCAAUAGGAAAAAACA--------UAGCAAUUGCACUUGCAAUCGCAU-UUGCAAUUGCAGGU .(((((((((((((((((-..(((...)))))))))))).)))))))).........--------..(((((((((..(((....))).-.))))))))).... ( -39.90) >DroEre_CAF1 288137 89 + 1 ACAGUUGGGUUGCAGUUAAAUUGCAGGGCCAAGGUGCAAUUGCAAUAGGAAAAGACA--------UAGUGAUU------GCAAUUGCAA-UUGCAAUUGCAGGU .(((((((((((((((...))))))..)))....((((((((((((...........--------.....)))------))))))))).-...))))))..... ( -26.19) >DroYak_CAF1 289596 89 + 1 ACAGUUAGCUUGCAGUUAAAUUGCAGGGCCAAGGUGGAAUUGCAAUAGGAAAAGACA--------UAGUGAUU------GCAAUUGCAU-UUGCAAUUGCAGGU .......((((((((((..(((((((..((.....))..)))))))...........--------..(..(.(------((....))).-)..))))))))))) ( -28.40) >DroPer_CAF1 258384 100 + 1 ACAGCUUGGA-ACAGACAAAUUGCAGAGG--AGACUGGCUACGGGUACGGCUACCCAUUGCGGCCCAUUGAUU-GCCUUGCCAUUUCUUUGUGCAAUUGCAGGU ...(((((..-.......(((((((((((--(((.((((...(((((....))))).....(((.........-)))..))))))))))).))))))).))))) ( -29.60) >consensus ACAGUUAGGUUGCAGUUAAAUUGCAGGGCCAAGGUGCAAUUCCAAUAGGAAAAGACA________UAGUGAUU___CUUGCAAUUGCAU_UUGCAAUUGCAGGU ...(((((.((((((.....)))))).((....))......)))))..............................(((((((((((.....))))))))))). ( -8.46 = -11.68 + 3.23)
Location | 2,141,446 – 2,141,541 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 67.69 |
Mean single sequence MFE | -24.17 |
Consensus MFE | -8.46 |
Energy contribution | -9.60 |
Covariance contribution | 1.14 |
Combinations/Pair | 1.15 |
Mean z-score | -2.33 |
Structure conservation index | 0.35 |
SVM decision value | 1.57 |
SVM RNA-class probability | 0.964382 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2141446 95 - 27905053 ACCUGCAAUUGCAA-AUGCAAUUGCAAGUGAAAUUGCAA--------UGUCUUUUCCUAUUCGAAGUGCACCUUGGCCCUGCAAUUUAAGUGCAACCUAACAGU ((.(((((((((..-..))))))))).)).((((((((.--------.(((.((((......))))........)))..))))))))................. ( -22.30) >DroPse_CAF1 256021 100 - 1 ACCUGCAAUUGCACAAAUAAAUGGCAAGGC-AAUCAAUGGGCCGCAAUGGGUAGCCGUACCCGUAGCCAGUCU--UCUCUGCAAUUUGUCUGU-UCCAAGCUGU ((..(((((((((........((((..(((-.........)))...(((((((....))))))).))))....--....))))).))))..))-.......... ( -25.69) >DroSec_CAF1 284125 94 - 1 ACCUGCAAUUGCAA-AUGCGAUUGCAAGUGCAAUUGCUA--------UGUUUUUUCCUAUUGGAAUUGCACCUUUGCCCUGCAAU-AAAGUGCAACCCAACAGU ....(((((((((.-.(((....)))..)))))))))..--------((((..((((....))))((((((..((((...)))).-...))))))...)))).. ( -29.80) >DroEre_CAF1 288137 89 - 1 ACCUGCAAUUGCAA-UUGCAAUUGC------AAUCACUA--------UGUCUUUUCCUAUUGCAAUUGCACCUUGGCCCUGCAAUUUAACUGCAACCCAACUGU ...(((((((((((-(.(.((..((------(.......--------)))..)).)..))))))))))))..((((...((((.......))))..)))).... ( -21.10) >DroYak_CAF1 289596 89 - 1 ACCUGCAAUUGCAA-AUGCAAUUGC------AAUCACUA--------UGUCUUUUCCUAUUGCAAUUCCACCUUGGCCCUGCAAUUUAACUGCAAGCUAACUGU ...(((((((((..-..))))))))------).......--------(((..((....((((((...((.....))...))))))..))..))).......... ( -19.90) >DroPer_CAF1 258384 100 - 1 ACCUGCAAUUGCACAAAGAAAUGGCAAGGC-AAUCAAUGGGCCGCAAUGGGUAGCCGUACCCGUAGCCAGUCU--CCUCUGCAAUUUGUCUGU-UCCAAGCUGU ((..(((((((((...(((..((((..(((-.........)))...(((((((....))))))).)))).)))--....))))).))))..))-.......... ( -26.20) >consensus ACCUGCAAUUGCAA_AUGCAAUUGCAAG___AAUCACUA________UGUCUUUUCCUAUUCGAAGUCCACCUUGGCCCUGCAAUUUAACUGCAACCAAACUGU ...(((((((((.....))))))))).....................................................((((.......)))).......... ( -8.46 = -9.60 + 1.14)
Location | 2,141,473 – 2,141,564 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 66.11 |
Mean single sequence MFE | -26.85 |
Consensus MFE | -10.28 |
Energy contribution | -12.26 |
Covariance contribution | 1.97 |
Combinations/Pair | 1.11 |
Mean z-score | -1.94 |
Structure conservation index | 0.38 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.873137 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2141473 91 + 27905053 GCCAAGGUGCACUUCGAAUAGGAAAAGACA--------UUGCAAUUUCACUUGCAAUUGCAU-UUGCAAUUGCAGGUUGAAGGUGUGA--------AGAAGCCGUCAG---- .....(((...((((.....(.......).--------..(((.((((((((((((((((..-..))))))))))).))))).)))))--------))..))).....---- ( -29.30) >DroPse_CAF1 256047 100 + 1 GA--AGACUGGCUACGGGUACGGCUACCCAUUGCGGCCCAUUGAUU-GCCUUGCCAUUUAUUUGUGCAAUUGCAGGUUGAAGGUGUAA--------A-CAGCCAUCAACAUC ..--.((.(((((..(((((....))))).(((((.((......((-((.((((((......)).))))..))))......)))))))--------.-.)))))))...... ( -28.00) >DroSec_CAF1 284151 91 + 1 GCAAAGGUGCAAUUCCAAUAGGAAAAAACA--------UAGCAAUUGCACUUGCAAUCGCAU-UUGCAAUUGCAGGUUGAAGGUGUGA--------AGGAGCCGUCAG---- (((....)))..((((....))))......--------..(((((((((..(((....))).-.)))))))))....(((.(((....--------....))).))).---- ( -27.80) >DroEre_CAF1 288164 85 + 1 GCCAAGGUGCAAUUGCAAUAGGAAAAGACA--------UAGUGAUU------GCAAUUGCAA-UUGCAAUUGCAGGUCGAAGGUGUGA--------AGCAGCCGUCAG---- .((....(((....)))...))....(((.--------...(((((------((((((((..-..))))))))).))))..(((....--------....))))))..---- ( -25.50) >DroYak_CAF1 289623 93 + 1 GCCAAGGUGGAAUUGCAAUAGGAAAAGACA--------UAGUGAUU------GCAAUUGCAU-UUGCAAUUGCAGGUUGAAGGUGUGAAGGUGUAAAGCAGCUGUCAG---- .....((..(...(((..((.(.....(((--------(..(((((------((((((((..-..))))))))).))))...)))).....).))..))).)..))..---- ( -22.20) >DroPer_CAF1 258410 100 + 1 GG--AGACUGGCUACGGGUACGGCUACCCAUUGCGGCCCAUUGAUU-GCCUUGCCAUUUCUUUGUGCAAUUGCAGGUUAAAGGUGUAA--------A-CAGCCAUCAACAUC (.--.((.(((((..(((((....))))).(((((.((..((((((-((.((((((......)).))))..))).))))).)))))))--------.-.)))))))..)... ( -28.30) >consensus GCCAAGGUGCAAUUCCAAUAGGAAAAGACA________UAGUGAUU___CUUGCAAUUGCAU_UUGCAAUUGCAGGUUGAAGGUGUGA________AGCAGCCGUCAG____ .................................................(((((((((((.....)))))))))))((((.(((................))).)))).... (-10.28 = -12.26 + 1.97)
Location | 2,141,473 – 2,141,564 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 66.11 |
Mean single sequence MFE | -22.58 |
Consensus MFE | -7.42 |
Energy contribution | -8.34 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.21 |
Mean z-score | -1.85 |
Structure conservation index | 0.33 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.646276 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2141473 91 - 27905053 ----CUGACGGCUUCU--------UCACACCUUCAACCUGCAAUUGCAA-AUGCAAUUGCAAGUGAAAUUGCAA--------UGUCUUUUCCUAUUCGAAGUGCACCUUGGC ----(..(.(((..((--------((............(((((((((..-..)))))))))((.((((..((..--------.))..))))))....)))).)).).)..). ( -21.60) >DroPse_CAF1 256047 100 - 1 GAUGUUGAUGGCUG-U--------UUACACCUUCAACCUGCAAUUGCACAAAUAAAUGGCAAGGC-AAUCAAUGGGCCGCAAUGGGUAGCCGUACCCGUAGCCAGUCU--UC ((((((((.((.((-.--------...)))).))))).(((..((((.((......)))))).))-))))...((((.((.(((((((....))))))).))..))))--.. ( -28.30) >DroSec_CAF1 284151 91 - 1 ----CUGACGGCUCCU--------UCACACCUUCAACCUGCAAUUGCAA-AUGCGAUUGCAAGUGCAAUUGCUA--------UGUUUUUUCCUAUUGGAAUUGCACCUUUGC ----.(((.((.....--------.....)).)))...(((((((((..-..))))))))).((((((((.(.(--------((........))).).))))))))...... ( -24.40) >DroEre_CAF1 288164 85 - 1 ----CUGACGGCUGCU--------UCACACCUUCGACCUGCAAUUGCAA-UUGCAAUUGC------AAUCACUA--------UGUCUUUUCCUAUUGCAAUUGCACCUUGGC ----..(((((.((..--------...))))...((..(((((((((..-..))))))))------).))....--------.)))....((...(((....)))....)). ( -19.90) >DroYak_CAF1 289623 93 - 1 ----CUGACAGCUGCUUUACACCUUCACACCUUCAACCUGCAAUUGCAA-AUGCAAUUGC------AAUCACUA--------UGUCUUUUCCUAUUGCAAUUCCACCUUGGC ----..(((((.((.....)).)...............(((((((((..-..))))))))------).......--------)))).......................... ( -14.40) >DroPer_CAF1 258410 100 - 1 GAUGUUGAUGGCUG-U--------UUACACCUUUAACCUGCAAUUGCACAAAGAAAUGGCAAGGC-AAUCAAUGGGCCGCAAUGGGUAGCCGUACCCGUAGCCAGUCU--CC ......((.(((((-.--------((((..........(((..((((.((......))))))(((-.........))))))..(((((....))))))))).))))))--). ( -26.90) >consensus ____CUGACGGCUGCU________UCACACCUUCAACCUGCAAUUGCAA_AUGCAAUUGCAAG___AAUCACUA________UGUCUUUUCCUAUUCGAAGUCCACCUUGGC .....(((.((..................)).)))...(((((((((.....)))))))))................................................... ( -7.42 = -8.34 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:28 2006