| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,944,019 – 14,944,122 |
| Length | 103 |
| Max. P | 0.774913 |
| Location | 14,944,019 – 14,944,122 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 95.60 |
| Mean single sequence MFE | -16.93 |
| Consensus MFE | -14.67 |
| Energy contribution | -15.00 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.774913 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14944019 103 - 27905053 CCAGC--AGCAACAGCUGUUGUCGUAACUUGACUUUAUGACACAGCCCACCAAACCACUCCCUACUACUGCUAAGUU-UUUAAUACUUCUGCAUUAAAAUAUUUUA ...((--((.....(((((.(((((((.......))))))))))))....................(((....))).-..........)))).............. ( -18.30) >DroSec_CAF1 79833 106 - 1 CCAGCACAGCAACAGCUGUUGUCGUAACUUGACUUUAUGACACAGCCCACCAAACCACUCCCUACUUUUGCUUAGUUUUUUAAUACUUCUACAUUAAAAUAUUUUA ..((((((((....)))))((((((((.......))))))))...........................))).....(((((((........)))))))....... ( -15.30) >DroSim_CAF1 72670 106 - 1 CCAGCACAGCAACAGCUGUUGUCGUAACUUGACUUUAUGACACAGCCCACCAAACCACUCCCUACUUUUGCUUAGUUUUUUAAUACUUCUGCAUUAAAAUAUUUUA ...(((((((....)))))((((((((.......))))))))..))......................(((..(((........)))...)))............. ( -17.20) >consensus CCAGCACAGCAACAGCUGUUGUCGUAACUUGACUUUAUGACACAGCCCACCAAACCACUCCCUACUUUUGCUUAGUUUUUUAAUACUUCUGCAUUAAAAUAUUUUA ..............(((((.(((((((.......))))))))))))......................(((..(((........)))...)))............. (-14.67 = -15.00 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:58 2006