| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,943,771 – 14,943,885 |
| Length | 114 |
| Max. P | 0.962618 |
| Location | 14,943,771 – 14,943,885 |
|---|---|
| Length | 114 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 89.92 |
| Mean single sequence MFE | -36.82 |
| Consensus MFE | -31.55 |
| Energy contribution | -31.12 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.86 |
| SVM decision value | 1.54 |
| SVM RNA-class probability | 0.962618 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14943771 114 - 27905053 UAGGCGCCACAGUCUCCAAUUUGCUGGACAAUUUGUAAGUGCCUGUUGCCGGGACAGGCACAAAUUGCAACUUCAACU------GCAACUGCAACAACUUGUAAUGGAGCAGUGAGUCAU ..(((..(((.(.(((((..((((.((.....(((((.(((((((((.....)))))))))...(((((........)------)))).)))))...)).)))))))))).))).))).. ( -36.90) >DroSec_CAF1 79593 120 - 1 UAGGCGCCGCAUUCCCCAAUUUGCUGGACAAUUUGUAAGUGCCUGUUGCCGGGACAGGCACAAAUUGCAACUUCAACUGCAACAGCAACUGCAACAACUUGUAAUGGAGCAGUGAGUCAU ..(((..(((.((((.....((((((............(((((((((.....)))))))))...(((((........))))))))))).(((((....)))))..))))..))).))).. ( -37.30) >DroSim_CAF1 72442 108 - 1 UAGGCGCCGCAUUCCCCAAUUUGCUGGACAAUUUGUAAGUGCCUGUUGCCGGGACAGGCACAAAUUGCAACU------------GCAACUGCAACAACUUGUAAUGGAGCAGUGAGUCAU ..(((..(((.(((((((......)))((((.((((..(((((((((.....)))))))))....((((...------------.....)))))))).))))...))))..))).))).. ( -34.20) >DroYak_CAF1 76575 116 - 1 UAGGCGCCACAUUCCCCAAUUUGCUGGACAAUUUGUAAGUGCCUGUUGCCGCGACAGGCACAAAUUGCAACUUGAACUGCAACAGCAA----GACAACUUGUAAUGGAGCAGUGAGUCAU ..(((..(((.((((.....((((.(..(((.((((((((((((((((...))))))))))...)))))).)))..).))))..((((----(....)))))...))))..))).))).. ( -38.90) >consensus UAGGCGCCACAUUCCCCAAUUUGCUGGACAAUUUGUAAGUGCCUGUUGCCGGGACAGGCACAAAUUGCAACUUCAACU______GCAACUGCAACAACUUGUAAUGGAGCAGUGAGUCAU ..(((..(((..((((((......)))((((.((((..(((((((((.....)))))))))...((((................)))).....)))).))))...)))...))).))).. (-31.55 = -31.12 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:57 2006