Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 14,943,421 – 14,943,535 |
Length | 114 |
Max. P | 0.870110 |
Location | 14,943,421 – 14,943,535 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.26 |
Mean single sequence MFE | -25.35 |
Consensus MFE | -20.35 |
Energy contribution | -20.85 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.04 |
Structure conservation index | 0.80 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.870110 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14943421 114 + 27905053 AAAUUGCUCAAGCCAAAUGGGCAAGCUGUUCUCGUCUUGCCAAGU------AAGUCUUGAUUCAAGCUCAAAUUGCUUAAGUUUUGUAUUUGCUUUUAUUUGGUAUUUCAUAUUCUAAUU ...........((((((((((((((.((....)).))))))((((------(((((..((((.((((.......)))).))))..).)))))))).))))))))................ ( -29.60) >DroSec_CAF1 79254 110 + 1 AAAUUGCUCAAGCCAAAUCGGCAAGUUGUUCUCGUCUUGCCAA----------GUCUUGAUUCAAGCUAAAAUUGCUUAUGUUUUGUAUUUGCUUUUAUUUGGUAUUUCAUAUUCUAAUU ...........(((((((.((((((.((....)).))))))((----------(((..(((..((((.......))))..)))..).))))......)))))))................ ( -21.50) >DroSim_CAF1 72096 110 + 1 AAAUUGCUCAAGCCAAAUCGGCAAGUUGUUCUCGUCUUGCCAA----------GUCUUGAUUCAAGCUCAAAUUGCUUAAGUUUUGUAUUUGCUUUUAUUUGGUAUUUCAUAUUCUAAUU ...........(((((((.((((((.((....)).))))))((----------(((..((((.((((.......)))).))))..).))))......)))))))................ ( -22.30) >DroYak_CAF1 76233 120 + 1 AAAUUGUGCAAGCCAAAUGGGCAAGUUGUUCUCGUCUUGCCAAGUCUUGCCAAGACUGGAUUCAAGCUCAAAUUGCUGAAGUUUUGCUUUUGCUUUUAUUUGGUAUUUCAUAUUCUAAUU ....((((.((((((((((((((((.((....)).))))))((((...((.((((((....(((.((.......)))))))))))))....)))).)))))))).)).))))........ ( -28.00) >consensus AAAUUGCUCAAGCCAAAUCGGCAAGUUGUUCUCGUCUUGCCAA__________GUCUUGAUUCAAGCUCAAAUUGCUUAAGUUUUGUAUUUGCUUUUAUUUGGUAUUUCAUAUUCUAAUU ...........(((((((.((((((.((....)).))))))..............(..((((.((((.......)))).))))..)...........)))))))................ (-20.35 = -20.85 + 0.50)
Location | 14,943,421 – 14,943,535 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.26 |
Mean single sequence MFE | -21.66 |
Consensus MFE | -16.30 |
Energy contribution | -16.80 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.78 |
Structure conservation index | 0.75 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.662956 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14943421 114 - 27905053 AAUUAGAAUAUGAAAUACCAAAUAAAAGCAAAUACAAAACUUAAGCAAUUUGAGCUUGAAUCAAGACUU------ACUUGGCAAGACGAGAACAGCUUGCCCAUUUGGCUUGAGCAAUUU ...........................((...........((((((.......)))))).(((((.((.------....((((((.(.......))))))).....)))))))))..... ( -22.30) >DroSec_CAF1 79254 110 - 1 AAUUAGAAUAUGAAAUACCAAAUAAAAGCAAAUACAAAACAUAAGCAAUUUUAGCUUGAAUCAAGAC----------UUGGCAAGACGAGAACAACUUGCCGAUUUGGCUUGAGCAAUUU ...((((((.((......)).......((...............)).))))))(((..(..((((..----------((((((((..(....)..))))))))))))..)..)))..... ( -20.56) >DroSim_CAF1 72096 110 - 1 AAUUAGAAUAUGAAAUACCAAAUAAAAGCAAAUACAAAACUUAAGCAAUUUGAGCUUGAAUCAAGAC----------UUGGCAAGACGAGAACAACUUGCCGAUUUGGCUUGAGCAAUUU ...........................((...........((((((.......)))))).(((((..----------((((((((..(....)..)))))))).....)))))))..... ( -21.50) >DroYak_CAF1 76233 120 - 1 AAUUAGAAUAUGAAAUACCAAAUAAAAGCAAAAGCAAAACUUCAGCAAUUUGAGCUUGAAUCCAGUCUUGGCAAGACUUGGCAAGACGAGAACAACUUGCCCAUUUGGCUUGCACAAUUU .................((((((....((....)).........((((.(((..((((....).((((((.((.....)).)))))))))..))).))))..))))))............ ( -22.30) >consensus AAUUAGAAUAUGAAAUACCAAAUAAAAGCAAAUACAAAACUUAAGCAAUUUGAGCUUGAAUCAAGAC__________UUGGCAAGACGAGAACAACUUGCCCAUUUGGCUUGAGCAAUUU .................((((((.................((((((.......))))))....................((((((..(....)..)))))).))))))............ (-16.30 = -16.80 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:56 2006