Locus 5724

Sequence ID 3R_DroMel_CAF1
Location 14,943,235 – 14,943,341
Length 106
Max. P 0.517711
window9367

overview

Window 7

Location 14,943,235 – 14,943,341
Length 106
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 82.09
Mean single sequence MFE -21.57
Consensus MFE -14.20
Energy contribution -14.70
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.59
Structure conservation index 0.66
SVM decision value -0.03
SVM RNA-class probability 0.517711
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14943235 106 - 27905053
AUGUAAUUGUAUGCCAAAGGUCAACAACUGUGUUGGAUUUGGUAAAAGCAAAUAUGGCAAAAGCAAACAAUAUCCAGACAAU-------------GUAUGUAUCUUAUAUAUGU-UGUAU
.....(((((.(((((((..((((((....)))))).)))))))............((....))..)))))......(((((-------------(((((((...)))))))))-))).. ( -24.80)
>DroSec_CAF1 79056 119 - 1
AUGUAAUUGUAUGCCAAAGGUCCACAACUGUGUUGGAUUUGGUAAAAGCAAAUAUGGCAAAAGCAAACAAUAUCCAGACAAUGCUACAUUUAAAUGUAUGUUUCUUAUAUAUGU-UGUAU
..(((.((((.((((((..(((((((....)).)))))))))))...)))).))).((....))..(((((((.........(((((((....))))).)).........))))-))).. ( -21.77)
>DroSim_CAF1 71922 94 - 1
AUG-AAUUGUAUGCCAAAGGUCAACAACUGUGUUUGAUUUGGUAAAAGCAAAUAUGGCAAAAGCAAACAAUAUCCAGACAAU------------------------AUAUAUGU-UGUAU
...-.(((((.(((....(.....)..(((((((((.(((....))).))))))))).....))).)))))......(((((------------------------(....)))-))).. ( -15.50)
>DroYak_CAF1 76059 103 - 1
AUGUAAUUGUAUGCCAAAGGUCAACAACUGUGUUGGAUUUGGUAAAAGCAAAUAAGGCAAAAGCACACAAAAUCCGGACAAUGCUACAC-----------------AUAAAUGUGUGCAU
.(((..((((.(((((((..((((((....)))))).)))))))...)))).....((....)).............)))((((.((((-----------------(....))))))))) ( -24.20)
>consensus
AUGUAAUUGUAUGCCAAAGGUCAACAACUGUGUUGGAUUUGGUAAAAGCAAAUAUGGCAAAAGCAAACAAUAUCCAGACAAU________________________AUAUAUGU_UGUAU
.....(((((.(((((((..((((((....)))))).)))))))............((....)).............)))))...................................... (-14.20 = -14.70 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:54 2006