Locus 5723

Sequence ID 3R_DroMel_CAF1
Location 14,941,744 – 14,941,864
Length 120
Max. P 0.756152
window9366

overview

Window 6

Location 14,941,744 – 14,941,864
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 95.14
Mean single sequence MFE -36.06
Consensus MFE -30.35
Energy contribution -30.47
Covariance contribution 0.12
Combinations/Pair 1.03
Mean z-score -2.00
Structure conservation index 0.84
SVM decision value 0.49
SVM RNA-class probability 0.756152
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14941744 120 - 27905053
CACUGGUUGGUUCAACUGCAGGGCAAAGCGCGCGAAUCAAUUUACAUUUGCAUCUGCAGUCGAGGCAUUUUGUCUUUGGGCAACGAACCUGCAGCUUAAGCACUGCAUUAAAUAAUCAUA
...((((((((((.((((((((((.....))((((((........)))))).)))))))).(((((.....)))))..(....))))))(((((........)))))......))))).. ( -35.80)
>DroSec_CAF1 77524 120 - 1
CGCAGGUUGGUUCAACUGCAGGGCAAAGCGCGCGAAUCAAUUUACAUUUGUAUCUGCAGUCGCGGCAUUUUGUCUUUGGGCAACGAACCUGCAGCUUAAGCACUGCAUUAAAUAAUCAUA
.((((....(((.(((((((((.....((.(((((.......(((....))).......)))))))...(((((....)))))....))))))).)).))).)))).............. ( -37.54)
>DroSim_CAF1 70399 120 - 1
CGCUGGUUGGUUCAACUGCAGGGCAAAGCGCGCGAAUCAAUUUACAUUUGCAUCUGCAGUCGCGGCAUUUUGUCUUUGGGCAACGAACCUGCAGCUUAAGCACUGCAUUAAAUAAUCAUA
...((((((((((.((((((((((.....))((((((........)))))).)))))))).........(((((....))))).)))))(((((........)))))......))))).. ( -35.10)
>DroYak_CAF1 74671 118 - 1
CGCC--UUGGUUCAACUGCAGGGCAAAGCGCACGAAUCAAUUUGCAUUUGCAACUGCAGUCGCCGCAUUUUGUCUUUGGGCAAUGAACCUGCAGCUUAAGCACUGCAUUAAAUAAUCAUA
....--..(((((((((((((.(((((..(((..........))).)))))..))))))).(((.((.........)))))..))))))(((((........)))))............. ( -35.80)
>consensus
CGCUGGUUGGUUCAACUGCAGGGCAAAGCGCGCGAAUCAAUUUACAUUUGCAUCUGCAGUCGCGGCAUUUUGUCUUUGGGCAACGAACCUGCAGCUUAAGCACUGCAUUAAAUAAUCAUA
........(((((.(((((((.((.....))((((((........))))))..))))))).........(((((....))))).)))))(((((........)))))............. (-30.35 = -30.47 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:53 2006