Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,135,985 – 2,136,098 |
Length | 113 |
Max. P | 0.778613 |
Location | 2,135,985 – 2,136,098 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 87.02 |
Mean single sequence MFE | -19.64 |
Consensus MFE | -15.59 |
Energy contribution | -17.34 |
Covariance contribution | 1.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.76 |
Structure conservation index | 0.79 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.778613 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2135985 113 + 27905053 UCUGCUACCACUAUUUCACUAGCCAGUUUUACAACGGCUUCCACAGAGAAGCAAAAUAAAAAAACACGACCUCCUCAGAAGCAGAAAGCUGGCCCAAAUUAUAAACCAAAACA .....................(((((((((......(((((....(((......................)))....)))))..))))))))).................... ( -19.15) >DroSec_CAF1 279038 113 + 1 UUUGCGACCACUAUUUCACCAGCCAGUUUUACAACGGCUUCCACAGAAAAGCGAAAUAAAAAAACACGACCUCCUCAGAUGCAGAAAGCUGGCCCAAAUUAUGAACCAAAACA ((((.(..((..((((.....(((((((((.((.(.((((........))))...............((.....)).).))...)))))))))..))))..))..)))))... ( -14.90) >DroEre_CAF1 283031 113 + 1 CCGGCAACCACUAUUUCACCAGCCAGUUUUCCAACGGCUUCCAUAGAGAAGCGGAAGAAAAAAACAGGACCUUCUCAGAAGCAGAAAGCUGGCCUGAAUCAUGAACCAAAACA ..((....((....((((...((((((((((.....(((((....((((((.(................))))))).))))).)))))))))).))))...))..))...... ( -28.59) >DroYak_CAF1 284586 113 + 1 UCCGCAACAACUAUUUCACCAGCCAGAUUUACAACGGCUUCCAUAGAAAAACGCAAUAAAAAAACACGACCUUCUCCGAAGCAGAAAACUGGCAUAAAAUAUGAACAAAAACA .....................(((((.(((......(((((...((((...((.............))...))))..)))))..))).))))).................... ( -15.92) >consensus UCUGCAACCACUAUUUCACCAGCCAGUUUUACAACGGCUUCCACAGAAAAGCGAAAUAAAAAAACACGACCUCCUCAGAAGCAGAAAGCUGGCCCAAAUUAUGAACCAAAACA .....................(((((((((......(((((....((((((...................)))))).)))))..))))))))).................... (-15.59 = -17.34 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:25 2006